Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0808
         (720 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    30   0.38 
SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein Pvg5|Schizos...    28   1.2  
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar...    28   1.2  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    27   3.6  
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    26   4.7  
SPBC651.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   6.2  
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc...    25   8.2  
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S...    25   8.2  

>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 19/60 (31%), Positives = 29/60 (48%)
 Frame = -1

Query: 588 MQ*NLFINLIKYNNIKIPCFILQNKQFTEW*YKYS*RHEIMVNHLDACEELLNAIKSIYK 409
           M  N F+N   + +IK   F  + K + E  Y Y+       N LD  E+ LN++ + YK
Sbjct: 208 MNQNSFLNNFNFEHIKAD-FAFRQKNYEESIYLYARLLIKFPNRLDYSEKYLNSLWNFYK 266


>SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein
           Pvg5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 16/47 (34%), Positives = 28/47 (59%)
 Frame = -3

Query: 430 CNKIYL*IGLNITIQKTLVFYSHYMNIQKLPKTESEHPTFHMVLSAL 290
           C +++L  G  I + + L+FYS+      + K ++E+P +H  LSAL
Sbjct: 17  CLRLFL-FGSLILLLRPLIFYSN----TTMKKLKTEYPIYHRHLSAL 58


>SPCC1235.09 |||histone deacetylase complex
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 564

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +2

Query: 476 CLHEYLYYHSVNCLFWRIKQG 538
           CLH + +   VNC+ W +++G
Sbjct: 425 CLHVFSFSSPVNCIDWNLREG 445


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -1

Query: 138 RASAPKGGRAALPAAPEIIQNQTRWGERRSPLSVNNAI 25
           R  A + GR AL  +  + +N TR+    +P+SV ++I
Sbjct: 104 RRPAGRRGRPALNTSNSLERNGTRYVSAEAPISVKSSI 141


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = +3

Query: 147 MTSSEVSAGWSHSASSLICSTSYGTHTLSHWARAALLRASGFYIYIRSRADK 302
           M  S VS  W++ AS  I +  Y    L   +  +L+ +    +Y+ S + K
Sbjct: 1   MRESNVSIVWNNKASVTINTVLYDRRALDCDSEMSLMNSLSHLVYLTSTSPK 52


>SPBC651.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 237

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
 Frame = -3

Query: 385 KTLVFYSHYMNIQKLPKTESEHPTFHMV------LSALLLMYI*KPEARRRAALA 239
           K++VF + Y +I K PK   E   FH +      + ++ L ++  PE R   A+A
Sbjct: 26  KSIVFRTQYESIFKNPKHHGEKKPFHCLFKLAGTMKSISLSHLDIPEHRMSNAVA 80


>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 807

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
 Frame = +3

Query: 30  HYLLKVGTFFLPILFGSELSPALREEQPFRLWVLKHGQLMTSSEVSAGWSHSASSLICST 209
           HY LK+   FL  + GS+  PA      F+L +   G    S ++    SH+  + +C  
Sbjct: 728 HYSLKMQKLFLIFVTGSDRIPATGAHN-FQLRISVLGP--DSDQLPI--SHTCFNHLCIW 782

Query: 210 SYGT-HTLSHWARAALLRASGFYI 278
            Y +   L      ALL  +GF I
Sbjct: 783 EYSSREKLKKKLDTALLETNGFNI 806


>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -1

Query: 573 FINLIKYNNIKIPCFILQN 517
           F+  +  N++KIPCFIL +
Sbjct: 307 FVGGVLENHLKIPCFILHS 325


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,215,794
Number of Sequences: 5004
Number of extensions: 69679
Number of successful extensions: 180
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)