Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0808
         (720 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41010-5|AAV28334.1|  975|Caenorhabditis elegans Hypothetical pr...    30   1.4  
U41010-4|AAV28333.1| 1622|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AC024788-3|AAF60614.2|   98|Caenorhabditis elegans Caenacin (cae...    29   2.5  
Z99281-14|CAB16524.1|  532|Caenorhabditis elegans Hypothetical p...    29   4.4  
Z79756-6|CAB02117.3|  693|Caenorhabditis elegans Hypothetical pr...    28   7.7  
U23486-8|AAC46779.3| 1025|Caenorhabditis elegans Nmda class glut...    28   7.7  
AF318613-1|AAK01101.2| 1025|Caenorhabditis elegans NMDA-type ion...    28   7.7  

>U41010-5|AAV28334.1|  975|Caenorhabditis elegans Hypothetical protein
            T05A12.4b protein.
          Length = 975

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -3

Query: 271  KPEARRRAALAQCDRVWVPYEVEQMRLDAECDQPAETSELVMS*PCFSTQ 122
            K E   R    + + +  P + ++ RLD E +   ET+E   + PC STQ
Sbjct: 854  KSERNGRVNEREIEEITRPKDAKRSRLDVEEEDEMETNEEKSNTPCSSTQ 903


>U41010-4|AAV28333.1| 1622|Caenorhabditis elegans Hypothetical protein
            T05A12.4a protein.
          Length = 1622

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -3

Query: 271  KPEARRRAALAQCDRVWVPYEVEQMRLDAECDQPAETSELVMS*PCFSTQ 122
            K E   R    + + +  P + ++ RLD E +   ET+E   + PC STQ
Sbjct: 854  KSERNGRVNEREIEEITRPKDAKRSRLDVEEEDEMETNEEKSNTPCSSTQ 903


>AC024788-3|AAF60614.2|   98|Caenorhabditis elegans Caenacin
           (caenorhabditis bacteriocin)protein 6 protein.
          Length = 98

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = -3

Query: 307 MVLSALLLMYI*KPEARRRAALAQCDRVWVPYEVEQMRLDAECDQPAETSE 155
           ++L  +L      P+A  R  LAQ ++V  PY+VE   LD   D P + S+
Sbjct: 8   ILLFCILATVFSAPKAPERGQLAQAEQVQGPYDVE---LDGADDAPHDRSK 55


>Z99281-14|CAB16524.1|  532|Caenorhabditis elegans Hypothetical
           protein Y57G11C.23 protein.
          Length = 532

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/59 (23%), Positives = 31/59 (52%)
 Frame = +3

Query: 84  LSPALREEQPFRLWVLKHGQLMTSSEVSAGWSHSASSLICSTSYGTHTLSHWARAALLR 260
           LS AL +   F ++    G  +  + ++ GW++++  +I S  +   T  +WA A +++
Sbjct: 150 LSAALNDVMSFYIFRFLVGFAIAGT-LTVGWTYASEMVIPSRRFRLRTFPNWANARMMQ 207


>Z79756-6|CAB02117.3|  693|Caenorhabditis elegans Hypothetical
           protein F53C11.2 protein.
          Length = 693

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 120 LWVLKHGQLMTSSEVSAGWSHSASSLICSTSYG 218
           LWV   G L+TS+    GWS   S +I +  YG
Sbjct: 551 LWVFTKG-LLTSNFSKVGWSFFVSWVIIANHYG 582


>U23486-8|AAC46779.3| 1025|Caenorhabditis elegans Nmda class
           glutamate receptor protein1 protein.
          Length = 1025

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +1

Query: 259 APPVFIYTLGVGQTRPCGKLDALIQFWVIF 348
           A P F+YT  +G    C +L   +  W IF
Sbjct: 403 ADPPFVYTTPIGSPSQCAELGNTVVEWSIF 432


>AF318613-1|AAK01101.2| 1025|Caenorhabditis elegans NMDA-type
           ionotropic glutamatereceptor NMR-1 protein.
          Length = 1025

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +1

Query: 259 APPVFIYTLGVGQTRPCGKLDALIQFWVIF 348
           A P F+YT  +G    C +L   +  W IF
Sbjct: 403 ADPPFVYTTPIGSPSQCAELGNTVVEWSIF 432


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,722,787
Number of Sequences: 27780
Number of extensions: 389940
Number of successful extensions: 970
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)