Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0807
         (735 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    28   0.068
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    23   3.4  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    22   4.5  
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    21   7.8  
DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory pro...    21   7.8  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    21   7.8  

>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 28.3 bits (60), Expect = 0.068
 Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
 Frame = +3

Query: 213 SDPNEIHDLG*GVSAKAAKWASSD----NDFHNPDRSIASERFSTGENLYWYMTSNKNHK 380
           S+P  + D G G +A  + W S+       ++  D ++A+  +  G +L       KN  
Sbjct: 37  SNPYALKDAG-GTAADMSAWTSAGLQPTTGYYPYDPALAAYGYGAGYDL---AARRKNAT 92

Query: 381 INPDSALESWFNEHE 425
               + L++W NEH+
Sbjct: 93  RESTATLKAWLNEHK 107


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -2

Query: 521 DHYQTHHLSVVGDLLFPSFLKVAR 450
           DH    H SV G L F + L V R
Sbjct: 311 DHLAVKHFSVEGQLEFRALLFVPR 334


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 5/8 (62%), Positives = 6/8 (75%)
 Frame = +1

Query: 577 CVQLWTCW 600
           C + WTCW
Sbjct: 112 CTRYWTCW 119


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 198 IWTAGSDP 221
           IWT GSDP
Sbjct: 445 IWTTGSDP 452


>DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory
           protein 15 protein.
          Length = 146

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +3

Query: 366 NKNHKINPDSALESWFNEHENYKFAPL 446
           N +H+I      +S FN HE  K   L
Sbjct: 104 NPHHEIKLQHLHQSKFNPHEEVKLQHL 130


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 545 RCR*RSQRDHYQTHH 501
           +CR R +R H+  HH
Sbjct: 251 KCRGRFRRRHHLVHH 265


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,279
Number of Sequences: 336
Number of extensions: 4243
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19675845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)