Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0807
(735 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|... 29 0.52
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po... 29 0.69
SPCC4B3.14 |cwf20||complexed with Cdc5 protein Cwf20 |Schizosacc... 29 0.91
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 27 2.8
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 27 3.7
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 27 3.7
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 26 4.8
SPBC1773.08c |||mannosyltransferase complex subunit |Schizosacch... 26 6.4
SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|... 25 8.5
SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit Swd2|Schizosa... 25 8.5
>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 29.5 bits (63), Expect = 0.52
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = -1
Query: 246 LIPNHVFHLG-RCRLSRYFT--LGYLFTPQIVTVDELSYIVAR 127
++ N H+ +C L +FT L+ P I+ +DE+ +++AR
Sbjct: 252 ILENEDHHINFQCELESHFTQSANELYNPVIIVLDEMDHLIAR 294
>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1396
Score = 29.1 bits (62), Expect = 0.69
Identities = 15/59 (25%), Positives = 32/59 (54%)
Frame = -2
Query: 641 SALRICMGYCLDSSQQVHSCTQRRMISSVQSARCR*RSQRDHYQTHHLSVVGDLLFPSF 465
S + + YC + +V + T RR++ V S R S+ DH ++H++ + +++ +F
Sbjct: 148 SQFKADLSYCGEGHSKVATITVRRLLEFVCSCRLP-ASKYDHPRSHYIRRICEIIRDAF 205
>SPCC4B3.14 |cwf20||complexed with Cdc5 protein Cwf20
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 290
Score = 28.7 bits (61), Expect = 0.91
Identities = 19/72 (26%), Positives = 32/72 (44%)
Frame = +3
Query: 267 KWASSDNDFHNPDRSIASERFSTGENLYWYMTSNKNHKINPDSALESWFNEHENYKFAPL 446
K + +D F+ D I++ERF + + L ++ P S+ S + +ENY
Sbjct: 58 KSSFNDKTFNESD-VISNERFKSNDLLELLPAPKNQAELAPKSSKRSDLDLNENYLLPNN 116
Query: 447 KSSDFQKTGKKQ 482
SD TG +
Sbjct: 117 SVSDLTSTGSSE 128
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 27.1 bits (57), Expect = 2.8
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -1
Query: 351 STSSRPLKTFRMLCSC 304
STS+ LKTFR +C C
Sbjct: 612 STSAEELKTFRAMCKC 627
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 26.6 bits (56), Expect = 3.7
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Frame = +2
Query: 2 FY*RAVVGCCETTLQIQCSRSLYLLSHSRAFNLLIVGSY--SHYRATIYDSSSTVTICGV 175
F+ R + E TL++ + L L+ F ++ S + +T SS ++CG
Sbjct: 388 FFKRCLEEDIEPTLRLDHASGLSWLTRRSVFTAILESSLIINPLHSTSLLSSQPCSLCGF 447
Query: 176 NK*PRVKYLDSRQRP 220
N+ ++ + R RP
Sbjct: 448 NRTQPLRQFEFRSRP 462
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 26.6 bits (56), Expect = 3.7
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 327 FSTGENLYWYMTSNKNHKINPDSALESWFNEHEN 428
++TG N +WY+ N P +AL SW EH N
Sbjct: 327 WTTG-NYHWYLKKEINI---PQNALISWHPEHAN 356
>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
E3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 26.2 bits (55), Expect = 4.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 602 NYLGNIPYKSGEPSNRLVCGAGDCSKP 682
N+ G I K+ EPS R++C C KP
Sbjct: 760 NHTGEITRKATEPSIRIICNF--CRKP 784
>SPBC1773.08c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 391
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +3
Query: 393 SALESWFNEHENYKFAPLKSSDFQKTGKKQIAHYT 497
++LE FN H NY + L F + K+ I T
Sbjct: 64 NSLEKHFNRHFNYPYTFLNDEPFDEKFKETILKLT 98
>SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 684
Score = 25.4 bits (53), Expect = 8.5
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +3
Query: 306 RSIASERFSTGENLYWYMTSNKNHKINPDSALESWFNEHENYKFAPLKSSDFQK 467
RS+AS Y + ++ N SA+++W EH + SDFQ+
Sbjct: 4 RSVASLGVLLAIVFYIFTYGFSTYRKNDTSAVKTWLEEHSIPYGSRSSPSDFQQ 57
>SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit
Swd2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 357
Score = 25.4 bits (53), Expect = 8.5
Identities = 7/29 (24%), Positives = 17/29 (58%)
Frame = -2
Query: 629 ICMGYCLDSSQQVHSCTQRRMISSVQSAR 543
+C+ C D + Q+++C + + S+ S +
Sbjct: 40 LCLASCTDDTLQLYNCISGKFVKSLASKK 68
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,173,413
Number of Sequences: 5004
Number of extensions: 69910
Number of successful extensions: 195
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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