Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0807
(735 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_887| Best HMM Match : SCP (HMM E-Value=7.1e-25) 33 0.32
SB_32805| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.55
SB_34393| Best HMM Match : RVT_1 (HMM E-Value=2e-36) 31 0.73
SB_20246| Best HMM Match : RVT_1 (HMM E-Value=1.4e-30) 31 0.97
SB_17882| Best HMM Match : ShTK (HMM E-Value=1e-05) 31 0.97
SB_57943| Best HMM Match : SCP (HMM E-Value=5.70048e-42) 30 1.7
SB_15991| Best HMM Match : SCP (HMM E-Value=2.3e-23) 29 5.2
SB_17970| Best HMM Match : DUF273 (HMM E-Value=7.5) 29 5.2
SB_7926| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_55473| Best HMM Match : SCP (HMM E-Value=1.6e-22) 28 6.8
SB_4689| Best HMM Match : Dicty_CTDC (HMM E-Value=5.8) 28 6.8
SB_37504| Best HMM Match : PIP5K (HMM E-Value=0) 28 9.0
SB_40168| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_20452| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_864| Best HMM Match : Sulfotransfer_1 (HMM E-Value=6.4e-05) 28 9.0
>SB_887| Best HMM Match : SCP (HMM E-Value=7.1e-25)
Length = 147
Score = 32.7 bits (71), Expect = 0.32
Identities = 20/63 (31%), Positives = 29/63 (46%)
Frame = +3
Query: 249 VSAKAAKWASSDNDFHNPDRSIASERFSTGENLYWYMTSNKNHKINPDSALESWFNEHEN 428
++A A WA+ + S A R GENLY S +IN ++ W++E
Sbjct: 30 LAADAQVWANHIAKNGRLEHSSADSRPGQGENLYMCSPS----EINAGDIVDEWYSEISK 85
Query: 429 YKF 437
YKF
Sbjct: 86 YKF 88
>SB_32805| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 224
Score = 31.9 bits (69), Expect = 0.55
Identities = 20/59 (33%), Positives = 32/59 (54%)
Frame = +3
Query: 330 STGENLYWYMTSNKNHKINPDSALESWFNEHENYKFAPLKSSDFQKTGKKQIAHYTQMV 506
S GENLY T++ D A++SW++E +NY + +D+ I H+TQ+V
Sbjct: 124 SDGENLYNKGTTSGTVSTCQD-AVDSWYSEIDNYDY-----TDYTNHPGGVIGHFTQIV 176
>SB_34393| Best HMM Match : RVT_1 (HMM E-Value=2e-36)
Length = 1198
Score = 31.5 bits (68), Expect = 0.73
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = -1
Query: 690 SP*GLLQSPAPQTRRLLGSPD-LYGILPR*FPAGP*LHTTKNDFICAVREVPIAQPTRSL 514
+P GL + Q RR LGSP Y P P +TT +P+ QP+ S
Sbjct: 1092 TPKGLRRRNRRQVRRALGSPQPTYAATQYRAPILPERYTTPEAIQSQSSPLPVQQPSVSE 1151
Query: 513 SDTPSECSG 487
+T +E SG
Sbjct: 1152 KETFNEMSG 1160
>SB_20246| Best HMM Match : RVT_1 (HMM E-Value=1.4e-30)
Length = 1191
Score = 31.1 bits (67), Expect = 0.97
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = -1
Query: 690 SP*GLLQSPAPQTRRLLGSPD-LYGILPR*FPAGP*LHTTKNDFICAVREVPIAQPTRSL 514
+P GL + Q RR LGSP Y P P +TT +P+ QP+ S
Sbjct: 1090 TPQGLRRRNRRQVRRALGSPQPTYAATQYRAPILPERYTTPEAIQSQSSPLPVQQPSVSD 1149
Query: 513 SDTPSECSG 487
+T +E SG
Sbjct: 1150 KETFNEMSG 1158
>SB_17882| Best HMM Match : ShTK (HMM E-Value=1e-05)
Length = 387
Score = 31.1 bits (67), Expect = 0.97
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +2
Query: 512 DSDRVGCAIGTSRTAQMKSFFVVCNYGPAGNYLGNIPYKSG 634
D+ R+G AI + S ++V Y P GNY G + G
Sbjct: 343 DTRRLGVAIARIKRGLWYSTYIVARYSPPGNYNGEFTQQVG 383
>SB_57943| Best HMM Match : SCP (HMM E-Value=5.70048e-42)
Length = 632
Score = 30.3 bits (65), Expect = 1.7
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +3
Query: 336 GENLYWYMTSNKNHKINPDSALESWFNEHENYKFAPLKSSDFQKTG-KKQIAHYTQMV 506
GEN+Y IN + A++ W+NE NY DF K G + H+TQ+V
Sbjct: 55 GENIY---VQFGQADINGEEAVDKWYNEVNNY--------DFGKPGFQSNTGHFTQVV 101
>SB_15991| Best HMM Match : SCP (HMM E-Value=2.3e-23)
Length = 1189
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/63 (25%), Positives = 31/63 (49%)
Frame = +3
Query: 249 VSAKAAKWASSDNDFHNPDRSIASERFSTGENLYWYMTSNKNHKINPDSALESWFNEHEN 428
++++A KWA N + D+ + GEN+++ N + A+ +W+ E +N
Sbjct: 370 LASEAQKWA---NHLASIDQMERDPLTNGGENIFYMYGGNPREAC--ERAVRNWYQEVKN 424
Query: 429 YKF 437
Y F
Sbjct: 425 YDF 427
>SB_17970| Best HMM Match : DUF273 (HMM E-Value=7.5)
Length = 271
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +2
Query: 92 FNLLIVGSYSHYRATIYDSSSTVTICGVNK*PRVKYLDSRQR 217
F + GSY+ Y+ T +S+ +V C ++ PR+ + R
Sbjct: 63 FGRSLKGSYASYQLTFPESNFSVFFCDIDSVPRIAITSTADR 104
>SB_7926| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 358
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +2
Query: 551 TAQMKSFFVVCNYGPAGNYLGNIPYKSGEPSNRLVCGAGDCSK 679
T+ + FVV Y P GN +G P ++ +P GA +C++
Sbjct: 259 TSSSGAHFVVARYTPPGNVMGQFP-ENVKPKTGGGIGAQECAQ 300
>SB_55473| Best HMM Match : SCP (HMM E-Value=1.6e-22)
Length = 141
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/59 (25%), Positives = 27/59 (45%)
Frame = +3
Query: 261 AAKWASSDNDFHNPDRSIASERFSTGENLYWYMTSNKNHKINPDSALESWFNEHENYKF 437
A WA + + +R+ GEN+ +H + AL+ W+NE E+Y++
Sbjct: 50 AQAWAGKLAREGRLEHASREDRYYKGENI-----CRMSHHFDIGDALQIWYNESESYQY 103
>SB_4689| Best HMM Match : Dicty_CTDC (HMM E-Value=5.8)
Length = 530
Score = 28.3 bits (60), Expect = 6.8
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Frame = -3
Query: 346 KFSPVENLSDAMLLSGLWKSLSDEAHFAAF--ALTPYPKSCISFGSLPAVQ--IFHPW 185
K+S V + ML S LW+SL +H+ F A+ CIS + + IF W
Sbjct: 216 KYSYVFSSPKKMLNSSLWRSLLSSSHYREFLVAIAIDEAHCISHWGIQTTKKNIFKVW 273
>SB_37504| Best HMM Match : PIP5K (HMM E-Value=0)
Length = 2119
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +3
Query: 309 SIASERFSTGENLYWYMTSNKNHKINPDSALESWFNEHENYK 434
SI S +++ E + N+N++ D AL WF + Y+
Sbjct: 315 SITSTKYNIDEESNGAESGNENNEDEDDEALPQWFRQLSGYE 356
>SB_40168| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1554
Score = 27.9 bits (59), Expect = 9.0
Identities = 20/64 (31%), Positives = 30/64 (46%)
Frame = -1
Query: 435 ICSFHVH*TKIRGRNLG*SCDFYCSSYTSTSSRPLKTFRMLCSCLDYGNHCPTKPTLQLS 256
+C+F TK+RG ++ D Y S ++ S P +++ CL H T QLS
Sbjct: 682 LCNFEFLLTKLRGTSIQNVLDDYASYLSAKPSDP--DVKLMNECLRLSVHPLTVEPAQLS 739
Query: 255 R*LL 244
LL
Sbjct: 740 TQLL 743
>SB_20452| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1324
Score = 27.9 bits (59), Expect = 9.0
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +1
Query: 109 RKLQPLSCDDIRQFVNGHNLRR--EQIAKGEISGQPAATQMKYMIWDKELARKLQ 267
RK +P+S D+ QF + NLR + E Q ++TQ K + + R Q
Sbjct: 861 RKCRPVSTGDLDQFYDSENLREFTSITEENEDKDQKSSTQSKLKMAKDSMTRAWQ 915
>SB_864| Best HMM Match : Sulfotransfer_1 (HMM E-Value=6.4e-05)
Length = 524
Score = 27.9 bits (59), Expect = 9.0
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 381 INPDSALESWFNEHENYKFAPLKSSD 458
+ P +ESW ++H N+K A L S+
Sbjct: 226 MEPPLGIESWLDQHMNFKQADLHDSE 251
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,144,038
Number of Sequences: 59808
Number of extensions: 545588
Number of successful extensions: 1264
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1263
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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