SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0807
         (735 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_887| Best HMM Match : SCP (HMM E-Value=7.1e-25)                     33   0.32 
SB_32805| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.55 
SB_34393| Best HMM Match : RVT_1 (HMM E-Value=2e-36)                   31   0.73 
SB_20246| Best HMM Match : RVT_1 (HMM E-Value=1.4e-30)                 31   0.97 
SB_17882| Best HMM Match : ShTK (HMM E-Value=1e-05)                    31   0.97 
SB_57943| Best HMM Match : SCP (HMM E-Value=5.70048e-42)               30   1.7  
SB_15991| Best HMM Match : SCP (HMM E-Value=2.3e-23)                   29   5.2  
SB_17970| Best HMM Match : DUF273 (HMM E-Value=7.5)                    29   5.2  
SB_7926| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.2  
SB_55473| Best HMM Match : SCP (HMM E-Value=1.6e-22)                   28   6.8  
SB_4689| Best HMM Match : Dicty_CTDC (HMM E-Value=5.8)                 28   6.8  
SB_37504| Best HMM Match : PIP5K (HMM E-Value=0)                       28   9.0  
SB_40168| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  
SB_20452| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  
SB_864| Best HMM Match : Sulfotransfer_1 (HMM E-Value=6.4e-05)         28   9.0  

>SB_887| Best HMM Match : SCP (HMM E-Value=7.1e-25)
          Length = 147

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 20/63 (31%), Positives = 29/63 (46%)
 Frame = +3

Query: 249 VSAKAAKWASSDNDFHNPDRSIASERFSTGENLYWYMTSNKNHKINPDSALESWFNEHEN 428
           ++A A  WA+        + S A  R   GENLY    S    +IN    ++ W++E   
Sbjct: 30  LAADAQVWANHIAKNGRLEHSSADSRPGQGENLYMCSPS----EINAGDIVDEWYSEISK 85

Query: 429 YKF 437
           YKF
Sbjct: 86  YKF 88


>SB_32805| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 20/59 (33%), Positives = 32/59 (54%)
 Frame = +3

Query: 330 STGENLYWYMTSNKNHKINPDSALESWFNEHENYKFAPLKSSDFQKTGKKQIAHYTQMV 506
           S GENLY   T++       D A++SW++E +NY +     +D+       I H+TQ+V
Sbjct: 124 SDGENLYNKGTTSGTVSTCQD-AVDSWYSEIDNYDY-----TDYTNHPGGVIGHFTQIV 176


>SB_34393| Best HMM Match : RVT_1 (HMM E-Value=2e-36)
          Length = 1198

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = -1

Query: 690  SP*GLLQSPAPQTRRLLGSPD-LYGILPR*FPAGP*LHTTKNDFICAVREVPIAQPTRSL 514
            +P GL +    Q RR LGSP   Y       P  P  +TT          +P+ QP+ S 
Sbjct: 1092 TPKGLRRRNRRQVRRALGSPQPTYAATQYRAPILPERYTTPEAIQSQSSPLPVQQPSVSE 1151

Query: 513  SDTPSECSG 487
             +T +E SG
Sbjct: 1152 KETFNEMSG 1160


>SB_20246| Best HMM Match : RVT_1 (HMM E-Value=1.4e-30)
          Length = 1191

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = -1

Query: 690  SP*GLLQSPAPQTRRLLGSPD-LYGILPR*FPAGP*LHTTKNDFICAVREVPIAQPTRSL 514
            +P GL +    Q RR LGSP   Y       P  P  +TT          +P+ QP+ S 
Sbjct: 1090 TPQGLRRRNRRQVRRALGSPQPTYAATQYRAPILPERYTTPEAIQSQSSPLPVQQPSVSD 1149

Query: 513  SDTPSECSG 487
             +T +E SG
Sbjct: 1150 KETFNEMSG 1158


>SB_17882| Best HMM Match : ShTK (HMM E-Value=1e-05)
          Length = 387

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +2

Query: 512 DSDRVGCAIGTSRTAQMKSFFVVCNYGPAGNYLGNIPYKSG 634
           D+ R+G AI   +     S ++V  Y P GNY G    + G
Sbjct: 343 DTRRLGVAIARIKRGLWYSTYIVARYSPPGNYNGEFTQQVG 383


>SB_57943| Best HMM Match : SCP (HMM E-Value=5.70048e-42)
          Length = 632

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +3

Query: 336 GENLYWYMTSNKNHKINPDSALESWFNEHENYKFAPLKSSDFQKTG-KKQIAHYTQMV 506
           GEN+Y          IN + A++ W+NE  NY        DF K G +    H+TQ+V
Sbjct: 55  GENIY---VQFGQADINGEEAVDKWYNEVNNY--------DFGKPGFQSNTGHFTQVV 101


>SB_15991| Best HMM Match : SCP (HMM E-Value=2.3e-23)
          Length = 1189

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 16/63 (25%), Positives = 31/63 (49%)
 Frame = +3

Query: 249 VSAKAAKWASSDNDFHNPDRSIASERFSTGENLYWYMTSNKNHKINPDSALESWFNEHEN 428
           ++++A KWA   N   + D+       + GEN+++    N       + A+ +W+ E +N
Sbjct: 370 LASEAQKWA---NHLASIDQMERDPLTNGGENIFYMYGGNPREAC--ERAVRNWYQEVKN 424

Query: 429 YKF 437
           Y F
Sbjct: 425 YDF 427


>SB_17970| Best HMM Match : DUF273 (HMM E-Value=7.5)
          Length = 271

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +2

Query: 92  FNLLIVGSYSHYRATIYDSSSTVTICGVNK*PRVKYLDSRQR 217
           F   + GSY+ Y+ T  +S+ +V  C ++  PR+    +  R
Sbjct: 63  FGRSLKGSYASYQLTFPESNFSVFFCDIDSVPRIAITSTADR 104


>SB_7926| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 551 TAQMKSFFVVCNYGPAGNYLGNIPYKSGEPSNRLVCGAGDCSK 679
           T+   + FVV  Y P GN +G  P ++ +P      GA +C++
Sbjct: 259 TSSSGAHFVVARYTPPGNVMGQFP-ENVKPKTGGGIGAQECAQ 300


>SB_55473| Best HMM Match : SCP (HMM E-Value=1.6e-22)
          Length = 141

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/59 (25%), Positives = 27/59 (45%)
 Frame = +3

Query: 261 AAKWASSDNDFHNPDRSIASERFSTGENLYWYMTSNKNHKINPDSALESWFNEHENYKF 437
           A  WA         + +   +R+  GEN+        +H  +   AL+ W+NE E+Y++
Sbjct: 50  AQAWAGKLAREGRLEHASREDRYYKGENI-----CRMSHHFDIGDALQIWYNESESYQY 103


>SB_4689| Best HMM Match : Dicty_CTDC (HMM E-Value=5.8)
          Length = 530

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
 Frame = -3

Query: 346 KFSPVENLSDAMLLSGLWKSLSDEAHFAAF--ALTPYPKSCISFGSLPAVQ--IFHPW 185
           K+S V +    ML S LW+SL   +H+  F  A+      CIS   +   +  IF  W
Sbjct: 216 KYSYVFSSPKKMLNSSLWRSLLSSSHYREFLVAIAIDEAHCISHWGIQTTKKNIFKVW 273


>SB_37504| Best HMM Match : PIP5K (HMM E-Value=0)
          Length = 2119

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +3

Query: 309 SIASERFSTGENLYWYMTSNKNHKINPDSALESWFNEHENYK 434
           SI S +++  E      + N+N++   D AL  WF +   Y+
Sbjct: 315 SITSTKYNIDEESNGAESGNENNEDEDDEALPQWFRQLSGYE 356


>SB_40168| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1554

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 20/64 (31%), Positives = 30/64 (46%)
 Frame = -1

Query: 435 ICSFHVH*TKIRGRNLG*SCDFYCSSYTSTSSRPLKTFRMLCSCLDYGNHCPTKPTLQLS 256
           +C+F    TK+RG ++    D Y S  ++  S P    +++  CL    H  T    QLS
Sbjct: 682 LCNFEFLLTKLRGTSIQNVLDDYASYLSAKPSDP--DVKLMNECLRLSVHPLTVEPAQLS 739

Query: 255 R*LL 244
             LL
Sbjct: 740 TQLL 743


>SB_20452| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1324

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +1

Query: 109  RKLQPLSCDDIRQFVNGHNLRR--EQIAKGEISGQPAATQMKYMIWDKELARKLQ 267
            RK +P+S  D+ QF +  NLR       + E   Q ++TQ K  +    + R  Q
Sbjct: 861  RKCRPVSTGDLDQFYDSENLREFTSITEENEDKDQKSSTQSKLKMAKDSMTRAWQ 915


>SB_864| Best HMM Match : Sulfotransfer_1 (HMM E-Value=6.4e-05)
          Length = 524

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 381 INPDSALESWFNEHENYKFAPLKSSD 458
           + P   +ESW ++H N+K A L  S+
Sbjct: 226 MEPPLGIESWLDQHMNFKQADLHDSE 251


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,144,038
Number of Sequences: 59808
Number of extensions: 545588
Number of successful extensions: 1264
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1263
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -