Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0806
(795 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce... 38 0.002
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 30 0.33
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein... 29 1.0
SPCC1235.06 |sif1||Sad1 interacting factor 1|Schizosaccharomyces... 27 2.3
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 27 2.3
SPAC17A2.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 3.1
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa... 27 3.1
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 27 3.1
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 27 3.1
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr... 27 3.1
SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr 2... 27 4.1
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc... 27 4.1
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 26 5.4
SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein glycotr... 26 5.4
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos... 26 7.1
SPAC25B8.12c |||nucleotide-sugar phosphatase |Schizosaccharomyce... 26 7.1
SPBC30D10.04 |swi3||replication fork protection complex subunit ... 25 9.4
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 25 9.4
SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces pom... 25 9.4
>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 563
Score = 37.5 bits (83), Expect = 0.002
Identities = 18/57 (31%), Positives = 31/57 (54%)
Frame = +1
Query: 337 KHRRNSGSMSTGKELEVIIEPTNSKTSARVGRLQNDSNEKIPITERRSVSNSKRKQK 507
+ S STG E EVI PT+ + + + + +IP+ +RR++ N K+K+K
Sbjct: 35 RQSEESAGQSTGTESEVIQTPTSVEENNEDENSMSTTTIEIPVVKRRNLRNQKKKKK 91
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 30.3 bits (65), Expect = 0.33
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Frame = +2
Query: 2 GKKL--DKSVKTITNDALSPPSKRNRRMRDSGSDMNCLISENKQNDAESTPPSDEMN-KS 172
GK L D + D LS S+ D+ S+ N +E DAE T P D +N +S
Sbjct: 219 GKMLNEDPEYDSAEEDYLSTDSEEFSEDSDNSSEENKDTNEPSTKDAEKTVPEDVVNLRS 278
Query: 173 LEKNDSTNNVPQFQ 214
+K + P+F+
Sbjct: 279 EQKLQPSFGHPEFE 292
>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 715
Score = 28.7 bits (61), Expect = 1.0
Identities = 17/65 (26%), Positives = 29/65 (44%)
Frame = +2
Query: 56 PSKRNRRMRDSGSDMNCLISENKQNDAESTPPSDEMNKSLEKNDSTNNVPQFQLDAVSPI 235
P N R G +IS + S+ P + ++++ S NVP F + + +
Sbjct: 533 PKYANGSKRKDGFGATSIISSGEH----SSLPKNSKSRNVSVFSSPFNVPSFTVSSSDQV 588
Query: 236 QKKRG 250
QKK+G
Sbjct: 589 QKKKG 593
>SPCC1235.06 |sif1||Sad1 interacting factor 1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 257
Score = 27.5 bits (58), Expect = 2.3
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +2
Query: 83 DSGSDMNCLISENKQNDAESTPPSDEMNKSLEKNDSTNNVPQFQ 214
DS SD+ SE + +TP + + +EK D T N Q +
Sbjct: 37 DSQSDVRATASEEAVHSETATPVTPMSSGFMEKRDDTFNADQVE 80
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 27.5 bits (58), Expect = 2.3
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +2
Query: 5 KKLDKSVKTITNDALSPPSKRNRRMRDSGSDMNCLI-SENKQNDAESTP 148
K K K+ ND ++ R+ + + ++ SENK NDA + P
Sbjct: 176 KDKKKKKKSKENDDAPKKDRKTRKKEEKARKLASMLESENKDNDANAAP 224
>SPAC17A2.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 177
Score = 27.1 bits (57), Expect = 3.1
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +2
Query: 131 DAESTPPSDEMNKSLEKNDSTNNVPQFQLDAVSPIQKKRGRN 256
DAE D +NK E+ D P+ QL +SP++KK R+
Sbjct: 66 DAE-LEEDDSINKPTEEADEA---PRTQLSVISPLEKKLKRD 103
>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
Nup132|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1162
Score = 27.1 bits (57), Expect = 3.1
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +3
Query: 570 RNKNNASVSFIDKTPCRIEKSSIDST--NASNEWLVPKS 680
+ KN VSF +EKS +DST N S +WL K+
Sbjct: 7 KRKNEEVVSFSPLKRISVEKSLLDSTAYNNSLDWLRSKN 45
>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 857
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +3
Query: 615 CRIEKSSIDSTNASNEWLVPKSERNDATEIVSVNEKEDDSNVK 743
C+ +SS+ S + L+P S ++ + N K+D S VK
Sbjct: 112 CKHVESSLASGSDVRSLLIPGSIDQSVLKVAATNNKDDSSAVK 154
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 27.1 bits (57), Expect = 3.1
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = +3
Query: 486 Q*QKETEVGGIINNSCNNSKDATTNSEIRNKNNASVSFIDKTPCRIEKSSI 638
Q ++ E SCNNS + T+ KN A D + RI +SI
Sbjct: 66 QRSRDDEEANSFEGSCNNSDQSWTSRVTSKKNEAGTESGDASVRRIYVTSI 116
>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 515
Score = 27.1 bits (57), Expect = 3.1
Identities = 19/67 (28%), Positives = 30/67 (44%)
Frame = +3
Query: 534 NNSKDATTNSEIRNKNNASVSFIDKTPCRIEKSSIDSTNASNEWLVPKSERNDATEIVSV 713
N D +SEI K NAS +EK + N++ + +SERN+++ +
Sbjct: 124 NEENDILYHSEISAKKNASPMEFGDASFDLEKQRLHFANSNLHSI--ESERNESSLSLDS 181
Query: 714 NEKEDDS 734
E E S
Sbjct: 182 GESEKKS 188
>SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 411
Score = 26.6 bits (56), Expect = 4.1
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +3
Query: 717 EKEDDSNVKCGVCLEA-FRHRHGLIT 791
++ +DSN+ C CL+ +H H L T
Sbjct: 277 QRSNDSNINCSTCLDVDCQHLHSLDT 302
>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 997
Score = 26.6 bits (56), Expect = 4.1
Identities = 15/67 (22%), Positives = 32/67 (47%)
Frame = +2
Query: 47 LSPPSKRNRRMRDSGSDMNCLISENKQNDAESTPPSDEMNKSLEKNDSTNNVPQFQLDAV 226
+SP + + + D + ++QN+ STPP E+ +E+ S + + +V
Sbjct: 361 VSPATSVHTTVSDITGHQSVTDESDEQNNCMSTPPKIEIESKIEEEISVVSKSKEISSSV 420
Query: 227 SPIQKKR 247
S + K++
Sbjct: 421 SSVGKEQ 427
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 26.2 bits (55), Expect = 5.4
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +2
Query: 20 SVKTITNDALSPPSKRNRRM-RDSGSDMNCLISENKQNDAESTPPSDEMNKSLEKNDSTN 196
S +T ++ A S S N+++ R ++++ +S ND SD + +E ++ N
Sbjct: 134 SDETASDSATSSSSDTNKKVNRKEHNELS--LSHLSFNDTSDFGSSDLSSSEIESTENDN 191
Query: 197 NVPQFQL 217
P F L
Sbjct: 192 KAPYFSL 198
>SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein
glycotransferase subunit |Schizosaccharomyces pombe|chr
3|||Manual
Length = 437
Score = 26.2 bits (55), Expect = 5.4
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -1
Query: 591 LKHYFYSEFHYWLSRPYYYYKNC 523
L+ +F++EF +L Y YY +C
Sbjct: 384 LRQFFHNEFPRFLPHAYPYYASC 406
>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 601
Score = 25.8 bits (54), Expect = 7.1
Identities = 18/49 (36%), Positives = 21/49 (42%)
Frame = +2
Query: 110 ISENKQNDAESTPPSDEMNKSLEKNDSTNNVPQFQLDAVSPIQKKRGRN 256
+S N+Q A S S MN S+ DSTN Q D S G N
Sbjct: 420 LSLNEQPAAPSNSNSQYMNTSMPTLDSTNMYGQSNQDPYSMSNGVYGSN 468
>SPAC25B8.12c |||nucleotide-sugar phosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 303
Score = 25.8 bits (54), Expect = 7.1
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -1
Query: 783 IHDDDETLLDKHHI*HY 733
I D D TLLDKHH H+
Sbjct: 20 ISDVDGTLLDKHHRFHF 36
>SPBC30D10.04 |swi3||replication fork protection complex subunit
Swi3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 181
Score = 25.4 bits (53), Expect = 9.4
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +2
Query: 86 SGSDMNCLISENKQNDAESTPPSDEMNKSLEKNDSTNNVPQFQL 217
S S + L+ ENK+ + + E + LE+N + P+ +L
Sbjct: 6 SDSGVEKLVEENKREEVKKNEEEKEFDLGLEENPDSVKKPRKRL 49
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 25.4 bits (53), Expect = 9.4
Identities = 12/47 (25%), Positives = 25/47 (53%)
Frame = +2
Query: 53 PPSKRNRRMRDSGSDMNCLISENKQNDAESTPPSDEMNKSLEKNDST 193
P SK+N+R + ++ +E + T PS ++NK + +D++
Sbjct: 1115 PASKKNKRQKGDVKKIDETKNEATDMEESLTTPSGKVNKEVIVDDTS 1161
>SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 286
Score = 25.4 bits (53), Expect = 9.4
Identities = 18/71 (25%), Positives = 28/71 (39%)
Frame = +3
Query: 576 KNNASVSFIDKTPCRIEKSSIDSTNASNEWLVPKSERNDATEIVSVNEKEDDSNVKCGVC 755
KNN +SF P +K + + W K E + + + K+D N K
Sbjct: 30 KNNKPISFFHDVPLTSDKDTFNMVTEIPRWTQAKCEISLTSPFHPI--KQDLKNGKLRYV 87
Query: 756 LEAFRHRHGLI 788
+F + HG I
Sbjct: 88 ANSFPY-HGFI 97
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,956,813
Number of Sequences: 5004
Number of extensions: 57995
Number of successful extensions: 208
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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