Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0806
(795 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1497 + 37783779-37783914,37783999-37784216,37784652-377852... 30 2.4
05_06_0116 - 25719030-25719458,25720138-25720301,25720390-257206... 29 3.2
10_03_0006 + 6929237-6929304,6929581-6929603,6929609-6929710,692... 29 4.3
05_04_0077 - 17712043-17712246,17712487-17712522,17712746-177129... 29 4.3
02_05_1225 + 35060642-35060815,35061254-35061802,35062284-350623... 29 4.3
10_08_0959 - 21813756-21814097,21814462-21814570,21814688-218147... 29 5.6
01_06_1007 - 33733500-33733604,33733837-33733917,33734191-337342... 29 5.6
09_04_0247 + 16030543-16031324,16032812-16033088,16033374-160335... 28 7.4
03_02_0844 + 11695159-11695263,11695402-11695463,11695789-116958... 28 7.4
12_01_0526 - 4171313-4171417,4171514-4171597,4171688-4171758,417... 28 9.8
07_01_0547 + 4052618-4052659,4055575-4055741,4055839-4056556,405... 28 9.8
02_04_0254 - 21314861-21315805 28 9.8
02_04_0252 - 21305834-21306778 28 9.8
02_04_0250 - 21287782-21288726 28 9.8
02_04_0248 - 21278756-21279700 28 9.8
02_04_0246 - 21269730-21270674 28 9.8
02_04_0109 + 19812544-19814474,19814574-19814607 28 9.8
>01_06_1497 +
37783779-37783914,37783999-37784216,37784652-37785202,
37785223-37786024
Length = 568
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -3
Query: 706 TISVASFLSLFGTNHSFEAFVESMLD 629
++ +A FLS+FG H F +F+ S +D
Sbjct: 484 SLGLAFFLSIFGVGHFFSSFIISAID 509
>05_06_0116 -
25719030-25719458,25720138-25720301,25720390-25720643,
25720727-25720782,25721032-25721169,25721315-25721421,
25721502-25721681,25721757-25721852,25721926-25722007,
25722084-25722425,25722666-25722695,25722788-25722880,
25722963-25723040,25723122-25723222,25723833-25724058,
25724647-25724760,25724855-25725009,25725515-25725554
Length = 894
Score = 29.5 bits (63), Expect = 3.2
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 373 KELEVIIEPTNSKTSARVGRLQNDSNEKIPITERRSV 483
K LE+++ TN + + RLQ EK I E+R +
Sbjct: 255 KALEILVNGTNEENQMAINRLQIIKEEKSKIEEKRKL 291
>10_03_0006 +
6929237-6929304,6929581-6929603,6929609-6929710,
6929752-6930207,6930237-6930538,6930628-6930717,
6931379-6931471
Length = 377
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +3
Query: 639 DSTNASNEWLVPKSERNDATEIVSVNEKEDDSNVKCGV 752
D + W + E DA+E VNE ED+S G+
Sbjct: 215 DKESEDESWATSEDEPEDASEDDGVNESEDESMASDGM 252
>05_04_0077 -
17712043-17712246,17712487-17712522,17712746-17712900,
17713431-17713591,17713950-17714110,17714188-17715657,
17715704-17715998,17716461-17717737,17717826-17718137,
17718223-17718356,17718449-17718521,17719994-17720059,
17720748-17720936
Length = 1510
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +2
Query: 8 KLDKSVKTITNDALSPPSKRNRRMRDSGSDMNCLISENKQNDAESTPPSDE 160
K +KS TI++ + +R+ + SG+D + LI+ K + PP +
Sbjct: 777 KGEKSTVTISSGQTMAKDRMHRKRKTSGADYDNLIASKKLKKVYNEPPKHQ 827
>02_05_1225 +
35060642-35060815,35061254-35061802,35062284-35062348,
35062417-35062957,35063321-35064610
Length = 872
Score = 29.1 bits (62), Expect = 4.3
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Frame = +2
Query: 41 DALSPPSKRNRRMRDSGSDM-NCLISENKQNDAESTPPSDEMNKS--LEKNDSTNNVPQF 211
DA+ P + + G+ NCL S K + P++ + LE DST N+P
Sbjct: 320 DAIEVPKVIEVKRDEHGNGQTNCLQSPRKNINVNLLKPTNRSEAADLLESQDSTKNIPII 379
Query: 212 QLD 220
LD
Sbjct: 380 VLD 382
>10_08_0959 - 21813756-21814097,21814462-21814570,21814688-21814740,
21814849-21815049,21815320-21815433,21815513-21815671,
21816490-21816849,21816928-21817149,21817967-21818093,
21818887-21819023,21819169-21819292,21819665-21820174,
21820255-21820436,21820812-21820862,21821114-21821266,
21821339-21821437,21821519-21821861,21821957-21822030,
21822105-21823025,21823133-21823257,21823419-21823461,
21823574-21823762,21824814-21825074,21825228-21825387,
21826200-21826363,21826523-21827009,21827090-21827431,
21827519-21827836,21828001-21828041,21828136-21828388,
21829158-21829261,21830198-21830386,21830543-21831196,
21831320-21831610,21831739-21831882,21832107-21832205,
21832549-21832657,21832739-21832923,21833008-21833121,
21833270-21833401,21833483-21833815,21833945-21834436,
21834773-21834847,21834917-21835066,21835143-21835241,
21835463-21835547,21837188-21837375,21837513-21837647,
21837729-21837849,21838127-21838194,21838275-21838370,
21838450-21838554,21838665-21838980,21839053-21839142,
21840011-21840181,21840850-21841010,21841088-21841270,
21841839-21841940,21842515-21842632,21842704-21842798,
21842972-21843022,21843107-21843241,21843333-21843436,
21844249-21844414,21844649-21844773,21845220-21845316
Length = 4181
Score = 28.7 bits (61), Expect = 5.6
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -2
Query: 473 RSVIGIFSLLSFCRRPTLADVLLFVGSIITSN 378
R VI + +L FC RPT+ ++ F+ +I +N
Sbjct: 1176 RVVISVATLTFFCHRPTVIAIMEFMNAINLAN 1207
>01_06_1007 -
33733500-33733604,33733837-33733917,33734191-33734238,
33734364-33734549,33735148-33735678,33735823-33735864,
33735945-33736065,33736200-33736281,33737169-33737227,
33738492-33738564,33738694-33738913
Length = 515
Score = 28.7 bits (61), Expect = 5.6
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +1
Query: 328 FSKKHRRNSGSMSTGKELEVIIEPTNSKTSAR-VGRLQNDSNEKIPITERRSVSNSKRKQ 504
F++K+RRN + GK + I PT S R G + + E +R S KR +
Sbjct: 229 FARKYRRNMRTRGRGKTIAPDIAPTGSDNEDREEGNAIDTTKESSSADDRSSDLMPKRGR 288
Query: 505 K 507
K
Sbjct: 289 K 289
>09_04_0247 +
16030543-16031324,16032812-16033088,16033374-16033559,
16033714-16033866,16034277-16034702,16035922-16037668,
16037687-16038183,16038519-16038709,16038786-16038941,
16040077-16040311,16040416-16040723,16041279-16041439,
16041852-16041895,16041975-16042067
Length = 1751
Score = 28.3 bits (60), Expect = 7.4
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = +2
Query: 62 KRNRRMRDSGSDMNCLISENKQNDAESTPPSDEMNKSLEKNDSTNNVPQFQLDAVSP 232
K N +++D+G DM+ + + ++E TP DE +L+ N+ LDA P
Sbjct: 547 KENGQIKDNG-DMDRARKDVNEEESEETPEDDEKGHALQSASLVMNM----LDATMP 598
>03_02_0844 +
11695159-11695263,11695402-11695463,11695789-11695876,
11695958-11696019,11696250-11696346,11696592-11696984,
11697072-11697611,11697856-11697966,11698102-11698242,
11698290-11698394,11698480-11698557,11699346-11699472,
11699580-11699625,11699709-11699754
Length = 666
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = +3
Query: 510 GGIINNSCNNSKDATTNSEIRNKNNASVSFIDKTPCRIEKSSIDSTNA 653
G + + NN + S +KNNASV+ PC+ S ++ A
Sbjct: 403 GDLFSFEPNNDQPTWLQSSKTSKNNASVTDQSDVPCKYTSSDASNSQA 450
>12_01_0526 -
4171313-4171417,4171514-4171597,4171688-4171758,
4171814-4171891,4174482-4174569,4174659-4174850,
4174939-4175802
Length = 493
Score = 27.9 bits (59), Expect = 9.8
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 4/88 (4%)
Frame = +3
Query: 516 IINNSCNNSKDATTNSEIRNKNNASVSFIDKTPCRIEKSSIDSTNASNEW--LVPKSERN 689
+IN+SC + K T NS I ++ TP + +D + S +W LV K+
Sbjct: 313 VINSSCRDGKSFTYNSSINIAVAVAIDGGLITPVLPDADKLDIYSLSRKWKELVDKARAK 372
Query: 690 DAT--EIVSVNEKEDDSNVKCGVCLEAF 767
E SV K D +K AF
Sbjct: 373 QLQPHEYNSVYVKIDSVLIKLQTHYSAF 400
>07_01_0547 +
4052618-4052659,4055575-4055741,4055839-4056556,
4056678-4057114,4057241-4057315,4057490-4057673,
4057759-4057854,4057952-4058018,4058556-4058715,
4058808-4059199,4059254-4059300
Length = 794
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +3
Query: 636 IDSTNASNEWLVPKSERNDATEIVSVNEKEDDSNVKCGVCLEAFRHR 776
+D N LVP E+N +TE + N E + ++ G +E + R
Sbjct: 270 MDEDQTENAQLVPDGEKNISTEEIQDNLYEANGSIPTGYKVETQQQR 316
>02_04_0254 - 21314861-21315805
Length = 314
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 684 RNDATEIVSVNEKEDDSNVKCGVCL 758
R+ A E+EDD V+C VCL
Sbjct: 103 RSTAAAAAKEEEEEDDDGVECAVCL 127
>02_04_0252 - 21305834-21306778
Length = 314
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 684 RNDATEIVSVNEKEDDSNVKCGVCL 758
R+ A E+EDD V+C VCL
Sbjct: 103 RSTAAAAAKEEEEEDDDGVECAVCL 127
>02_04_0250 - 21287782-21288726
Length = 314
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 684 RNDATEIVSVNEKEDDSNVKCGVCL 758
R+ A E+EDD V+C VCL
Sbjct: 103 RSTAAAAAKEEEEEDDDGVECAVCL 127
>02_04_0248 - 21278756-21279700
Length = 314
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 684 RNDATEIVSVNEKEDDSNVKCGVCL 758
R+ A E+EDD V+C VCL
Sbjct: 103 RSTAAAAAKEEEEEDDDGVECAVCL 127
>02_04_0246 - 21269730-21270674
Length = 314
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 684 RNDATEIVSVNEKEDDSNVKCGVCL 758
R+ A E+EDD V+C VCL
Sbjct: 103 RSTAAAAAKEEEEEDDDGVECAVCL 127
>02_04_0109 + 19812544-19814474,19814574-19814607
Length = 654
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 738 HYCRLLFHLPKQFRLHRFSRFSEPTIRLKHSW 643
H RL H+ +++ H F RF T+RLK +
Sbjct: 4 HIGRLSSHVRQRYLEHLFQRFGNCTVRLKDGY 35
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,406,191
Number of Sequences: 37544
Number of extensions: 304631
Number of successful extensions: 1010
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1009
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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