Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0806
(795 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_28587| Best HMM Match : zf-C2H2 (HMM E-Value=1.4e-25) 36 0.029
SB_26957| Best HMM Match : PDZ (HMM E-Value=0) 36 0.038
SB_3931| Best HMM Match : GA (HMM E-Value=3.9) 35 0.087
SB_27302| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.12
SB_35263| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.20
SB_18254| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.47
SB_54706| Best HMM Match : Linker_histone (HMM E-Value=0.014) 32 0.62
SB_1652| Best HMM Match : Keratin_B2 (HMM E-Value=0.031) 32 0.62
SB_15137| Best HMM Match : SRCR (HMM E-Value=4.9e-28) 31 0.81
SB_23985| Best HMM Match : CRAM_rpt (HMM E-Value=3.4) 31 0.81
SB_48031| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.5
SB_20239| Best HMM Match : RanGAP1_C (HMM E-Value=3) 30 2.5
SB_8981| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.5
SB_28794| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_15593| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_37932| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_8090| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_38361| Best HMM Match : VPS9 (HMM E-Value=0.0012) 29 4.3
SB_55766| Best HMM Match : Keratin_B2 (HMM E-Value=1.8) 29 4.3
SB_12991| Best HMM Match : TP2 (HMM E-Value=1.4) 29 4.3
SB_1742| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_46673| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.7
SB_25374| Best HMM Match : DUF1087 (HMM E-Value=3.2) 29 5.7
SB_24400| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.7
SB_50209| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_39497| Best HMM Match : zf-C3HC4 (HMM E-Value=5.1e-12) 28 7.6
SB_15580| Best HMM Match : Pentapeptide (HMM E-Value=0.2) 28 7.6
>SB_28587| Best HMM Match : zf-C2H2 (HMM E-Value=1.4e-25)
Length = 346
Score = 36.3 bits (80), Expect = 0.029
Identities = 16/75 (21%), Positives = 37/75 (49%)
Frame = +3
Query: 540 SKDATTNSEIRNKNNASVSFIDKTPCRIEKSSIDSTNASNEWLVPKSERNDATEIVSVNE 719
S + T E+ ++ N+ + + +T ++ ++ S A ++W P ERN A+ + S++
Sbjct: 10 STPSPTQIEMEDEVNSEMDSVSETSENVDLDAVQSLLAMSQWSPPTPERNTASPVSSISR 69
Query: 720 KEDDSNVKCGVCLEA 764
+++ V A
Sbjct: 70 NSSSASLSSNVSAAA 84
>SB_26957| Best HMM Match : PDZ (HMM E-Value=0)
Length = 1685
Score = 35.9 bits (79), Expect = 0.038
Identities = 19/57 (33%), Positives = 38/57 (66%)
Frame = +3
Query: 555 TNSEIRNKNNASVSFIDKTPCRIEKSSIDSTNASNEWLVPKSERNDATEIVSVNEKE 725
T++++RN+ ++ SFID + C + S+ ST++ + VP+ E + AT VS++++E
Sbjct: 1215 THTDVRNRVHSPTSFIDDS-CSSSQLSLQSTSSQH---VPEIEEDPATTRVSIDKQE 1267
>SB_3931| Best HMM Match : GA (HMM E-Value=3.9)
Length = 288
Score = 34.7 bits (76), Expect = 0.087
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = +3
Query: 534 NNSK--DATTNSEIRNKNNASVSFIDKTPCRIEKSSIDSTNASNEWLVPKSERNDATEIV 707
NNS A+ N +R KNN++V+ EK++ T ASN LV K + T+
Sbjct: 22 NNSTVTKASNNRLVREKNNSTVTKASNNRLEREKNNSTVTKASNNHLVRKKNNSTVTK-A 80
Query: 708 SVNEKEDDSN 737
S N E + N
Sbjct: 81 SNNRLEREKN 90
Score = 33.9 bits (74), Expect = 0.15
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Frame = +3
Query: 534 NNSK--DATTNSEIRNKNNASVSFIDKTPCRIEKSSIDSTNASNEWLVPKSERNDATEIV 707
NNS A+ N +R KNN++V+ EK++ T ASN LV + + T+
Sbjct: 56 NNSTVTKASNNHLVRKKNNSTVTKASNNRLEREKNNSTVTKASNNHLVREKNNSAVTKAS 115
Query: 708 S---VNEKEDDSNV 740
+ V++ E+DS V
Sbjct: 116 NNRLVSKGEEDSTV 129
Score = 32.7 bits (71), Expect = 0.35
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +3
Query: 534 NNSK--DATTNSEIRNKNNASVSFIDKTPCRIEKSSIDSTNASNEWLVPKSERNDATE 701
NNS A+ N +R KNN++V+ EK++ T ASN LV K + T+
Sbjct: 225 NNSTVTKASNNRLVREKNNSTVTKASNNRLEREKNNSTVTKASNNHLVRKKNNSTVTK 282
Score = 30.7 bits (66), Expect = 1.4
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Frame = +3
Query: 534 NNSK--DATTNSEIRNKNNASVSFIDKTPCRIEKSSIDSTNASNEWLVPKSERNDATEIV 707
NNS A+ N R KNN++V+ EK++ T ASN LV K E +
Sbjct: 73 NNSTVTKASNNRLEREKNNSTVTKASNNHLVREKNNSAVTKASNNRLVSKGEEDSTVTKA 132
Query: 708 SVNEKEDDSN 737
S N + N
Sbjct: 133 SHNSLVREKN 142
>SB_27302| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 150
Score = 34.3 bits (75), Expect = 0.12
Identities = 20/71 (28%), Positives = 36/71 (50%)
Frame = +3
Query: 522 NNSCNNSKDATTNSEIRNKNNASVSFIDKTPCRIEKSSIDSTNASNEWLVPKSERNDATE 701
NNS NN + N+ I N+NN + + I+ +SI++ N +N + + RN+
Sbjct: 31 NNSINNRNNNNNNNSINNRNNTNNNSINNRNNNNNNNSINNRNNTNNNSI--NNRNNNNN 88
Query: 702 IVSVNEKEDDS 734
S+N ++S
Sbjct: 89 NNSINNCNNNS 99
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +3
Query: 519 INNSCNNSKDATTNSEIRNKNNASVSFID--KTPCRIEKSSIDSTNASNE 662
INN NNS + N+ I N++N + + I+ RI SS ++ N+ N+
Sbjct: 92 INNCNNNSINNRNNNSINNRSNTNNNSINNRSNTNRINSSSNNNDNSDNK 141
Score = 28.7 bits (61), Expect = 5.7
Identities = 19/67 (28%), Positives = 36/67 (53%)
Frame = +3
Query: 522 NNSCNNSKDATTNSEIRNKNNASVSFIDKTPCRIEKSSIDSTNASNEWLVPKSERNDATE 701
NN+ NNS + N+ I N+NN S++ T +SI++ + +N + S ND ++
Sbjct: 85 NNNNNNSINNCNNNSINNRNNNSINNRSNT----NNNSINNRSNTNR-INSSSNNNDNSD 139
Query: 702 IVSVNEK 722
S +++
Sbjct: 140 NKSKHQE 146
>SB_35263| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 314
Score = 33.5 bits (73), Expect = 0.20
Identities = 16/73 (21%), Positives = 34/73 (46%)
Frame = +3
Query: 522 NNSCNNSKDATTNSEIRNKNNASVSFIDKTPCRIEKSSIDSTNASNEWLVPKSERNDATE 701
NN+ +++ + + N+ I + NN+ + D + ID+ N+ N + +D
Sbjct: 184 NNNTSDNNNTSDNNNISDNNNSDNNNSDNNNISDNNNIIDNNNSDNNNTSDNNNTSDNNN 243
Query: 702 IVSVNEKEDDSNV 740
I N D++N+
Sbjct: 244 ISDNNNTSDNNNI 256
>SB_18254| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 353
Score = 32.3 bits (70), Expect = 0.47
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Frame = +3
Query: 534 NNSK--DATTNSEIRNKNNASVSFIDKTPCRIEKSSIDSTNASNEWLVPKSERNDAT 698
NNSK A+ N +R KNN++V+ EK++ T ASN LV E+N++T
Sbjct: 84 NNSKVTKASNNRLVREKNNSTVTKASNNRLVREKNNSTVTKASNNRLV--REKNNST 138
Score = 31.9 bits (69), Expect = 0.62
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Frame = +3
Query: 534 NNSK--DATTNSEIRNKNNASVSFIDKTPCRIEKSSIDSTNASNEWLVPKSERNDATEIV 707
NNS A+ N +R KNN++V+ EK++ T ASN LV K + T+
Sbjct: 118 NNSTVTKASNNRLVREKNNSTVTKASNNHLVREKNNSTVTKASNNRLVRKKNNSTVTKAF 177
Query: 708 S---VNEKEDDSNVK 743
+ V EK + + K
Sbjct: 178 NNRLVREKNNSTVTK 192
Score = 31.1 bits (67), Expect = 1.1
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = +3
Query: 534 NNSK--DATTNSEIRNKNNASVSFIDKTPCRIEKSSIDSTNASNEWLVPKSERNDATEIV 707
NNS A+ N +R KNN++V+ EK++ T ASN LV E+N++T
Sbjct: 101 NNSTVTKASNNRLVREKNNSTVTKASNNRLVREKNNSTVTKASNNHLV--REKNNSTVTK 158
Query: 708 SVNEK 722
+ N +
Sbjct: 159 ASNNR 163
Score = 30.3 bits (65), Expect = 1.9
Identities = 19/58 (32%), Positives = 31/58 (53%)
Frame = +3
Query: 549 ATTNSEIRNKNNASVSFIDKTPCRIEKSSIDSTNASNEWLVPKSERNDATEIVSVNEK 722
A+ N +R KNN++V+ EK++ T ASN LV E+N++T + N +
Sbjct: 57 ASNNRLVREKNNSTVTKASNNHLVWEKNNSKVTKASNNRLV--REKNNSTVTKASNNR 112
>SB_54706| Best HMM Match : Linker_histone (HMM E-Value=0.014)
Length = 323
Score = 31.9 bits (69), Expect = 0.62
Identities = 17/64 (26%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Frame = +1
Query: 331 SKKHRRNSGSMSTGKELEVI---IEPTNSKTSARVGRLQNDSNEKIPITERRSVSNSKRK 501
S+KH NS +T +++ ++ TNS+ + + Q+ +++K ++ +NS+ K
Sbjct: 131 SQKHNTNSQMQNTNSQMQNTNSQMQNTNSQMQNTISQKQSTNSQKQSTNSQKQNTNSEAK 190
Query: 502 QKLA 513
KLA
Sbjct: 191 YKLA 194
>SB_1652| Best HMM Match : Keratin_B2 (HMM E-Value=0.031)
Length = 563
Score = 31.9 bits (69), Expect = 0.62
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +1
Query: 337 KHRRNSGSMSTGKELEVIIEPTNSKTSARVGRLQNDSNEKIPITERRSVSNS 492
+H G+M+ G + +++ T ++ ++ VG + ND + P RS NS
Sbjct: 206 RHTSGVGNMNNGNKRTKVLDNTQTRHTSGVGNMNNDDSPGQPTRHFRSRGNS 257
>SB_15137| Best HMM Match : SRCR (HMM E-Value=4.9e-28)
Length = 327
Score = 31.5 bits (68), Expect = 0.81
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +3
Query: 522 NNSCNNSKDATTNSEIRNKNNASVSFIDKTPCRIEKSSIDSTNASN 659
NNS +NS ++T+NS + NN S S + + S+ ++ ++SN
Sbjct: 162 NNSTSNSNNSTSNSNNSSNNNNSTSNSNNSTSNSNNSTRNNNSSSN 207
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +3
Query: 522 NNSCNNSKDATTNSEIRNKNNASVSFIDKTPCRIEKSSIDSTNASN 659
NNS NN+ + +NS RN NN++ + + T +S + + SN
Sbjct: 122 NNSNNNNSTSNSNSSTRNNNNSTSNSNNSTRNNNNSTSNSNNSTSN 167
>SB_23985| Best HMM Match : CRAM_rpt (HMM E-Value=3.4)
Length = 323
Score = 31.5 bits (68), Expect = 0.81
Identities = 17/63 (26%), Positives = 32/63 (50%)
Frame = +2
Query: 2 GKKLDKSVKTITNDALSPPSKRNRRMRDSGSDMNCLISENKQNDAESTPPSDEMNKSLEK 181
GK+ D + +T++ SK D ++ + +K N+++ + SDE N+S E
Sbjct: 63 GKEEDGEEEVVTDERGISSSKDESDESDESNESDESNESDKSNESDESNESDESNESDES 122
Query: 182 NDS 190
N+S
Sbjct: 123 NES 125
>SB_48031| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 335
Score = 29.9 bits (64), Expect = 2.5
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = +3
Query: 522 NNSCNNSKDATTNSE-IRNKNNASVSFIDKTPCRIEKSSIDSTNASNEWLVPKSERNDAT 698
NN+ N D+ S R+ NNAS D+ K DS NASN + N +
Sbjct: 215 NNASNGDSDSNNASNGDRDSNNASNG--DRDSNNASKGDSDSNNASNGDSDSNNASNGDS 272
Query: 699 EIVSVNEKEDDSN 737
+ + + + DSN
Sbjct: 273 DSNNASNGDSDSN 285
Score = 28.3 bits (60), Expect = 7.6
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +3
Query: 522 NNSCNNSKDATTNSE-IRNKNNASVSFIDKTPCRIEKSSIDSTNASNEWLVPKSERNDAT 698
NN+ N +D+ S R+ NNAS D DS NASN + N +
Sbjct: 225 NNASNGDRDSNNASNGDRDSNNASKGDSDSN--NASNGDSDSNNASNGDSDSNNASNGDS 282
Query: 699 EIVSVNEKEDDSN 737
+ + + + DSN
Sbjct: 283 DSNNASNGDSDSN 295
>SB_20239| Best HMM Match : RanGAP1_C (HMM E-Value=3)
Length = 346
Score = 29.9 bits (64), Expect = 2.5
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +3
Query: 567 IRNKNNASVSFIDKTPCRIEKSSIDSTNASNEWLVPKSERNDATEIVSVNE 719
+++ N SVS +DK + + A + ++P S+ ND E+VS++E
Sbjct: 72 VKSTANQSVSLLDKLFAESPVTD-NKPRAKSSTMLPSSDSNDVGEVVSLDE 121
>SB_8981| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1726
Score = 29.9 bits (64), Expect = 2.5
Identities = 15/53 (28%), Positives = 33/53 (62%)
Frame = +3
Query: 588 SVSFIDKTPCRIEKSSIDSTNASNEWLVPKSERNDATEIVSVNEKEDDSNVKC 746
S++ K R+E++ ++ +SNE L+ +S+ ND ++ ++VN+ ++ N C
Sbjct: 1404 SLTMQPKKRLRLEETILECPESSNE-LLFESDSNDESKSLTVNDGVENDNDDC 1455
>SB_28794| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 167
Score = 29.5 bits (63), Expect = 3.3
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -1
Query: 627 FLFYTEFYL*MKLKHYFYSEFHYWLSRPYYYY 532
+ +Y +Y HY+Y ++Y+ YYYY
Sbjct: 118 YYYYYYYYYYYYYHHYYYYYYYYYYYYYYYYY 149
>SB_15593| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1593
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = -2
Query: 269 ATDIRFYLFSFGWVKQHPVEIV-VHCLL 189
+T RF ++SF +V QHP ++V +HC L
Sbjct: 376 STTQRFTIYSFRFVHQHPDQVVYLHCRL 403
>SB_37932| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 542
Score = 29.5 bits (63), Expect = 3.3
Identities = 21/78 (26%), Positives = 37/78 (47%)
Frame = +3
Query: 531 CNNSKDATTNSEIRNKNNASVSFIDKTPCRIEKSSIDSTNASNEWLVPKSERNDATEIVS 710
C+ S + T S+I ++SVSFI R+E S +AS V + +T+++
Sbjct: 426 CDVSNEVVTTSDISPDLSSSVSFIILFEFRVELSKWMFLDASGLCQVVQLTIRPSTDVIE 485
Query: 711 VNEKEDDSNVKCGVCLEA 764
+ + N +CL+A
Sbjct: 486 LIARVQLKNSLLYLCLKA 503
>SB_8090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 178
Score = 29.5 bits (63), Expect = 3.3
Identities = 18/72 (25%), Positives = 38/72 (52%)
Frame = +3
Query: 522 NNSCNNSKDATTNSEIRNKNNASVSFIDKTPCRIEKSSIDSTNASNEWLVPKSERNDATE 701
NN+ N +K++ NS+ NN + D+ I+++SI+++ N N+ +
Sbjct: 60 NNNNNGNKNSKNNSDSDYNNNKDNNNDDENSNSIDENSINNSQGCN---------NNNDK 110
Query: 702 IVSVNEKEDDSN 737
+V+ + +DD+N
Sbjct: 111 VVTTQQCKDDNN 122
>SB_38361| Best HMM Match : VPS9 (HMM E-Value=0.0012)
Length = 882
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -2
Query: 260 IRFYLFSFGWVKQHPVEIVVHCLLNHFFQVIYSFHLTAELILH 132
+RFY F FG+ +P IV L HFF+++ + ++H
Sbjct: 16 LRFYYFYFGFPVYYPACIV---RLQHFFRIVLQRSTDYDKVIH 55
>SB_55766| Best HMM Match : Keratin_B2 (HMM E-Value=1.8)
Length = 245
Score = 29.1 bits (62), Expect = 4.3
Identities = 18/72 (25%), Positives = 31/72 (43%)
Frame = +3
Query: 501 TEVGGIINNSCNNSKDATTNSEIRNKNNASVSFIDKTPCRIEKSSIDSTNASNEWLVPKS 680
T +G NSC N KD+T+ S ++A++ F C S+ S +N K
Sbjct: 86 TTIGVCPTNSCTNLKDSTSGSS--TISSATICFGPTNRCTTTSSTTISVGPTNSCTNVKD 143
Query: 681 ERNDATEIVSVN 716
N + +++
Sbjct: 144 STNTSGSSTTID 155
>SB_12991| Best HMM Match : TP2 (HMM E-Value=1.4)
Length = 296
Score = 29.1 bits (62), Expect = 4.3
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = -1
Query: 627 FLFYTEFYL*MKLKHYFYSEFHYWLSRPYYYYKNC 523
+ +Y +Y +Y+Y ++Y+ YYYY C
Sbjct: 261 YYYYYYYYYYYYYYYYYYHYYYYYYYYYYYYYYYC 295
Score = 28.3 bits (60), Expect = 7.6
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -1
Query: 621 FYTEFYL*MKLKHYFYSEFHYWLSRPYYYY 532
+Y +Y +Y+Y +HY+ YYYY
Sbjct: 260 YYYYYYYYYYYYYYYYYYYHYYYYYYYYYY 289
>SB_1742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 64
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/55 (27%), Positives = 24/55 (43%)
Frame = +2
Query: 35 TNDALSPPSKRNRRMRDSGSDMNCLISENKQNDAESTPPSDEMNKSLEKNDSTNN 199
T + +KR RR R G D + + N ND + D+ + + +D NN
Sbjct: 10 TKKITTTTTKRRRRRRRDGDDDDNNNNNNNNNDDDDDDDDDDDDDDDDNDDDDNN 64
>SB_46673| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 112
Score = 28.7 bits (61), Expect = 5.7
Identities = 20/72 (27%), Positives = 34/72 (47%)
Frame = +3
Query: 522 NNSCNNSKDATTNSEIRNKNNASVSFIDKTPCRIEKSSIDSTNASNEWLVPKSERNDATE 701
NN+ N D NS+ +N NN S + D E D++N+ NE + N+ +
Sbjct: 21 NNNSYNENDNNNNSDNKNDNNNSDNENDNNNSYNEN---DNSNSDNE--NDNNNSNNEND 75
Query: 702 IVSVNEKEDDSN 737
+ N + D++N
Sbjct: 76 NNNSNNENDNNN 87
>SB_25374| Best HMM Match : DUF1087 (HMM E-Value=3.2)
Length = 144
Score = 28.7 bits (61), Expect = 5.7
Identities = 18/75 (24%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Frame = +3
Query: 522 NNSCNNSKDATTNSEIRNKNNASVSFIDKTPCRIEKSSIDSTNASNEWLV---PKSERND 692
N++ + K +NSE N NN+ + + + S+ D++N+ LV P + +D
Sbjct: 47 NSNSDKLKSDNSNSEKLNSNNSDSNNSNSDNSNSDNSNSDNSNSDKLKLVNSNPDNSNSD 106
Query: 693 ATEIVSVNEKEDDSN 737
++V+ N + +S+
Sbjct: 107 KLKLVNSNSDKLNSD 121
>SB_24400| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 813
Score = 28.7 bits (61), Expect = 5.7
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = +3
Query: 516 IINNSCNNSKDATTNSEIRNKNNASVSFIDKTPCRIEKSSIDSTNASNEWLVPKSERN 689
+INN+ +NS + N+ N NN S S + CR K++ D N + + S+ N
Sbjct: 654 VINNNNDNSNN--NNNSSSNNNNNSSSNNNVKFCRCIKNNNDMNNIDTDTINNNSKSN 709
>SB_50209| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 473
Score = 28.3 bits (60), Expect = 7.6
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = +3
Query: 522 NNSCNNSKDATTNSEIRNKNNASVSFIDKTPCRIEKSSI--DSTNASNEWLVPKSERNDA 695
NNS NN ++ +N+ N NN + ++ ++ +S D N SN ++ ND
Sbjct: 295 NNSNNNDNNSNSNNNDNNSNNNDFNNSNRNDHNVDNNSHNNDEKNKSNS-----NDNNDE 349
Query: 696 TEIVSVNEKEDDSNVK 743
+ N K DSN K
Sbjct: 350 NNNNNSNNK--DSNNK 363
>SB_39497| Best HMM Match : zf-C3HC4 (HMM E-Value=5.1e-12)
Length = 558
Score = 28.3 bits (60), Expect = 7.6
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = +3
Query: 618 RIEKSSIDSTNASNEWLVPKSERNDATEIVSVNEKEDDSNVKCGVCLEAFRHRHGL 785
R+E +S+ A++E E + +E S+ + N KC +CLE F++ L
Sbjct: 173 RMETRQYESSLANSE-RSSHIEEDGLSETASLASHVTEKNPKCVICLEGFKNGQDL 227
>SB_15580| Best HMM Match : Pentapeptide (HMM E-Value=0.2)
Length = 610
Score = 28.3 bits (60), Expect = 7.6
Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +3
Query: 525 NSCNNSKDATTNSEIRNKNNASVSFIDKTPCRIEKSSIDSTNASNEWLVPKSERN-DATE 701
N+ NN+ +A + N NNA+ + + ++ ++ NA+N + N +AT
Sbjct: 246 NNANNANNANNANNANNANNANANNANANNANANNANANNANANNANANNANANNANATN 305
Query: 702 IVSVNEKEDDSN 737
+ N ++N
Sbjct: 306 ANATNANATNAN 317
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,033,937
Number of Sequences: 59808
Number of extensions: 391114
Number of successful extensions: 2958
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2316
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2191792647
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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