Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0806
(795 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF067613-11|AAN73862.2| 334|Caenorhabditis elegans Serpentine r... 39 0.005
AF332201-1|AAK17972.1| 474|Caenorhabditis elegans nuclear recep... 31 1.3
AF332200-1|AAK17971.1| 453|Caenorhabditis elegans nuclear recep... 31 1.3
Z81562-9|CAN99693.1| 1376|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z81562-8|CAN99692.1| 1817|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z81474-10|CAN99685.1| 1376|Caenorhabditis elegans Hypothetical p... 29 3.8
Z81474-9|CAN99684.1| 1817|Caenorhabditis elegans Hypothetical pr... 29 3.8
U00044-6|AAA50679.2| 670|Caenorhabditis elegans Bard homolog (t... 29 3.8
Z12017-1|CAA78047.1| 458|Caenorhabditis elegans Hypothetical pr... 28 6.7
U80439-6|AAB37642.1| 564|Caenorhabditis elegans Ezrin/radixin/m... 28 6.7
U80439-5|AAB37643.1| 563|Caenorhabditis elegans Ezrin/radixin/m... 28 6.7
AY643539-1|AAT66915.1| 566|Caenorhabditis elegans ERM-1C protein. 28 6.7
AY643538-1|AAT66914.1| 563|Caenorhabditis elegans ERM-1A protein. 28 6.7
AB107270-3|BAC98358.1| 564|Caenorhabditis elegans ERM-1B protein. 28 6.7
AB107270-2|BAC98357.1| 566|Caenorhabditis elegans ERM-1Asv prot... 28 6.7
AB107270-1|BAC98356.1| 563|Caenorhabditis elegans ERM-1A protein. 28 6.7
AB107269-1|BAC98355.1| 564|Caenorhabditis elegans ERM-1B protein. 28 6.7
AB107268-1|BAC98354.1| 563|Caenorhabditis elegans ERM-1A protein. 28 6.7
Z93398-7|CAD90188.2| 4955|Caenorhabditis elegans Hypothetical pr... 28 8.9
Z93398-6|CAD90187.2| 4944|Caenorhabditis elegans Hypothetical pr... 28 8.9
Z92788-7|CAD90177.2| 4955|Caenorhabditis elegans Hypothetical pr... 28 8.9
Z92788-6|CAD90176.2| 4944|Caenorhabditis elegans Hypothetical pr... 28 8.9
Z49069-1|CAA88864.1| 1696|Caenorhabditis elegans Hypothetical pr... 28 8.9
AL031637-4|CAD90184.2| 4955|Caenorhabditis elegans Hypothetical ... 28 8.9
AL031637-3|CAD90183.2| 4944|Caenorhabditis elegans Hypothetical ... 28 8.9
AJ505905-1|CAD44516.1| 3522|Caenorhabditis elegans VAB-10B prote... 28 8.9
AJ505816-1|CAD44324.1| 4944|Caenorhabditis elegans VAB-10B prote... 28 8.9
>AF067613-11|AAN73862.2| 334|Caenorhabditis elegans Serpentine
receptor, class z protein19 protein.
Length = 334
Score = 38.7 bits (86), Expect = 0.005
Identities = 18/54 (33%), Positives = 30/54 (55%)
Frame = -2
Query: 251 YLFSFGWVKQHPVEIVVHCLLNHFFQVIYSFHLTAELILHRFVYFQI*DNSYQN 90
Y++ F ++ EIV+ +NHF+ VI + L I+ FV++ I NS +N
Sbjct: 50 YVYVFKTNRERDKEIVIFPFVNHFYNVIKIYQLLISSIIAGFVFYDIFGNSIEN 103
>AF332201-1|AAK17972.1| 474|Caenorhabditis elegans nuclear receptor
NHR-2 protein.
Length = 474
Score = 30.7 bits (66), Expect = 1.3
Identities = 21/73 (28%), Positives = 34/73 (46%)
Frame = +2
Query: 29 TITNDALSPPSKRNRRMRDSGSDMNCLISENKQNDAESTPPSDEMNKSLEKNDSTNNVPQ 208
T TN PP +N ++ S ++ + + ND S PP N + N +N PQ
Sbjct: 59 TATNSTYMPPQSKNTVTPNATSPLSQISDRDSGNDTIS-PPLTSQNSATTPN--YHNQPQ 115
Query: 209 FQLDAVSPIQKKR 247
QL +P+Q+ +
Sbjct: 116 MQL---TPLQQAK 125
>AF332200-1|AAK17971.1| 453|Caenorhabditis elegans nuclear receptor
NHR-2 protein.
Length = 453
Score = 30.7 bits (66), Expect = 1.3
Identities = 21/73 (28%), Positives = 34/73 (46%)
Frame = +2
Query: 29 TITNDALSPPSKRNRRMRDSGSDMNCLISENKQNDAESTPPSDEMNKSLEKNDSTNNVPQ 208
T TN PP +N ++ S ++ + + ND S PP N + N +N PQ
Sbjct: 55 TATNSTYMPPQSKNTVTPNATSPLSQISDRDSGNDTIS-PPLTSQNSATTPN--YHNQPQ 111
Query: 209 FQLDAVSPIQKKR 247
QL +P+Q+ +
Sbjct: 112 MQL---TPLQQAK 121
>Z81562-9|CAN99693.1| 1376|Caenorhabditis elegans Hypothetical
protein C18D4.2b protein.
Length = 1376
Score = 29.1 bits (62), Expect = 3.8
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +3
Query: 519 INNSCNNSKDATTNSEIRNKNNASVSFIDKTPCRIEKSSIDSTNASN 659
I S ++SKD + ++E +N+ + KTP E+S +N SN
Sbjct: 495 ITQSLSDSKDDSLSNEANLQNDLPSTSDSKTPTSRERSESSESNISN 541
>Z81562-8|CAN99692.1| 1817|Caenorhabditis elegans Hypothetical
protein C18D4.2a protein.
Length = 1817
Score = 29.1 bits (62), Expect = 3.8
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +3
Query: 519 INNSCNNSKDATTNSEIRNKNNASVSFIDKTPCRIEKSSIDSTNASN 659
I S ++SKD + ++E +N+ + KTP E+S +N SN
Sbjct: 495 ITQSLSDSKDDSLSNEANLQNDLPSTSDSKTPTSRERSESSESNISN 541
>Z81474-10|CAN99685.1| 1376|Caenorhabditis elegans Hypothetical
protein C18D4.2b protein.
Length = 1376
Score = 29.1 bits (62), Expect = 3.8
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +3
Query: 519 INNSCNNSKDATTNSEIRNKNNASVSFIDKTPCRIEKSSIDSTNASN 659
I S ++SKD + ++E +N+ + KTP E+S +N SN
Sbjct: 495 ITQSLSDSKDDSLSNEANLQNDLPSTSDSKTPTSRERSESSESNISN 541
>Z81474-9|CAN99684.1| 1817|Caenorhabditis elegans Hypothetical
protein C18D4.2a protein.
Length = 1817
Score = 29.1 bits (62), Expect = 3.8
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +3
Query: 519 INNSCNNSKDATTNSEIRNKNNASVSFIDKTPCRIEKSSIDSTNASN 659
I S ++SKD + ++E +N+ + KTP E+S +N SN
Sbjct: 495 ITQSLSDSKDDSLSNEANLQNDLPSTSDSKTPTSRERSESSESNISN 541
>U00044-6|AAA50679.2| 670|Caenorhabditis elegans Bard homolog
(tumor suppressorgene bard1) protein 1 protein.
Length = 670
Score = 29.1 bits (62), Expect = 3.8
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +3
Query: 504 EVGGIINNSCNNSKDATTNSEIRNKNNASVSFI 602
E G +IN SC ++ + T + +R +N V ++
Sbjct: 369 EAGAVINASCGSTLETTLHEAVRRQNTQIVEYL 401
>Z12017-1|CAA78047.1| 458|Caenorhabditis elegans Hypothetical
protein R08D7.1 protein.
Length = 458
Score = 28.3 bits (60), Expect = 6.7
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +2
Query: 26 KTITNDALSPPSK--RNRRMRDSGSDMNCLISENKQNDAESTPPSDEMNKSLEKNDSTNN 199
K I + LSP + R +R R SD + K+ND++++PP N+ +D N+
Sbjct: 91 KVIKPEPLSPDNSPPRGKRQRHD-SDNSPPRPSRKRNDSDNSPPRPSRNR--HDSDKDNS 147
Query: 200 VPQ 208
P+
Sbjct: 148 PPR 150
>U80439-6|AAB37642.1| 564|Caenorhabditis elegans
Ezrin/radixin/moesin protein 1,isoform b protein.
Length = 564
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +2
Query: 137 ESTPPSDEMNKSLE-KNDSTNNVPQFQLDAVSPIQK 241
+ T DE N + E ND+ NVPQ +L+ V+ +K
Sbjct: 466 DETATDDEDNGATELTNDADQNVPQHELERVTAAEK 501
>U80439-5|AAB37643.1| 563|Caenorhabditis elegans
Ezrin/radixin/moesin protein 1,isoform a protein.
Length = 563
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +2
Query: 137 ESTPPSDEMNKSLE-KNDSTNNVPQFQLDAVSPIQK 241
+ T DE N + E ND+ NVPQ +L+ V+ +K
Sbjct: 465 DETATDDEDNGATELTNDADQNVPQHELERVTAAEK 500
>AY643539-1|AAT66915.1| 566|Caenorhabditis elegans ERM-1C protein.
Length = 566
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +2
Query: 137 ESTPPSDEMNKSLE-KNDSTNNVPQFQLDAVSPIQK 241
+ T DE N + E ND+ NVPQ +L+ V+ +K
Sbjct: 468 DETATDDEDNGATELTNDADQNVPQHELERVTAAEK 503
>AY643538-1|AAT66914.1| 563|Caenorhabditis elegans ERM-1A protein.
Length = 563
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +2
Query: 137 ESTPPSDEMNKSLE-KNDSTNNVPQFQLDAVSPIQK 241
+ T DE N + E ND+ NVPQ +L+ V+ +K
Sbjct: 465 DETATDDEDNGATELTNDADQNVPQHELERVTAAEK 500
>AB107270-3|BAC98358.1| 564|Caenorhabditis elegans ERM-1B protein.
Length = 564
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +2
Query: 137 ESTPPSDEMNKSLE-KNDSTNNVPQFQLDAVSPIQK 241
+ T DE N + E ND+ NVPQ +L+ V+ +K
Sbjct: 466 DETATDDEDNGATELTNDADQNVPQHELERVTAAEK 501
>AB107270-2|BAC98357.1| 566|Caenorhabditis elegans ERM-1Asv
protein.
Length = 566
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +2
Query: 137 ESTPPSDEMNKSLE-KNDSTNNVPQFQLDAVSPIQK 241
+ T DE N + E ND+ NVPQ +L+ V+ +K
Sbjct: 468 DETATDDEDNGATELTNDADQNVPQHELERVTAAEK 503
>AB107270-1|BAC98356.1| 563|Caenorhabditis elegans ERM-1A protein.
Length = 563
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +2
Query: 137 ESTPPSDEMNKSLE-KNDSTNNVPQFQLDAVSPIQK 241
+ T DE N + E ND+ NVPQ +L+ V+ +K
Sbjct: 465 DETATDDEDNGATELTNDADQNVPQHELERVTAAEK 500
>AB107269-1|BAC98355.1| 564|Caenorhabditis elegans ERM-1B protein.
Length = 564
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +2
Query: 137 ESTPPSDEMNKSLE-KNDSTNNVPQFQLDAVSPIQK 241
+ T DE N + E ND+ NVPQ +L+ V+ +K
Sbjct: 466 DETATDDEDNGATELTNDADQNVPQHELERVTAAEK 501
>AB107268-1|BAC98354.1| 563|Caenorhabditis elegans ERM-1A protein.
Length = 563
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +2
Query: 137 ESTPPSDEMNKSLE-KNDSTNNVPQFQLDAVSPIQK 241
+ T DE N + E ND+ NVPQ +L+ V+ +K
Sbjct: 465 DETATDDEDNGATELTNDADQNVPQHELERVTAAEK 500
>Z93398-7|CAD90188.2| 4955|Caenorhabditis elegans Hypothetical protein
ZK1151.1c protein.
Length = 4955
Score = 27.9 bits (59), Expect = 8.9
Identities = 20/86 (23%), Positives = 40/86 (46%)
Frame = +3
Query: 513 GIINNSCNNSKDATTNSEIRNKNNASVSFIDKTPCRIEKSSIDSTNASNEWLVPKSERND 692
GI+ + DAT +EI+ + + D+ +IE + NA NE L + + ++
Sbjct: 2298 GILEATEELEVDATNRAEIQEQLETTQKKADELERKIENVKKAALNAQNEGLELEKKLDE 2357
Query: 693 ATEIVSVNEKEDDSNVKCGVCLEAFR 770
I +VN E++ + + E+ +
Sbjct: 2358 L--IGTVNSAENELELAAPIAAESLK 2381
>Z93398-6|CAD90187.2| 4944|Caenorhabditis elegans Hypothetical protein
ZK1151.1b protein.
Length = 4944
Score = 27.9 bits (59), Expect = 8.9
Identities = 20/86 (23%), Positives = 40/86 (46%)
Frame = +3
Query: 513 GIINNSCNNSKDATTNSEIRNKNNASVSFIDKTPCRIEKSSIDSTNASNEWLVPKSERND 692
GI+ + DAT +EI+ + + D+ +IE + NA NE L + + ++
Sbjct: 2298 GILEATEELEVDATNRAEIQEQLETTQKKADELERKIENVKKAALNAQNEGLELEKKLDE 2357
Query: 693 ATEIVSVNEKEDDSNVKCGVCLEAFR 770
I +VN E++ + + E+ +
Sbjct: 2358 L--IGTVNSAENELELAAPIAAESLK 2381
>Z92788-7|CAD90177.2| 4955|Caenorhabditis elegans Hypothetical protein
ZK1151.1c protein.
Length = 4955
Score = 27.9 bits (59), Expect = 8.9
Identities = 20/86 (23%), Positives = 40/86 (46%)
Frame = +3
Query: 513 GIINNSCNNSKDATTNSEIRNKNNASVSFIDKTPCRIEKSSIDSTNASNEWLVPKSERND 692
GI+ + DAT +EI+ + + D+ +IE + NA NE L + + ++
Sbjct: 2298 GILEATEELEVDATNRAEIQEQLETTQKKADELERKIENVKKAALNAQNEGLELEKKLDE 2357
Query: 693 ATEIVSVNEKEDDSNVKCGVCLEAFR 770
I +VN E++ + + E+ +
Sbjct: 2358 L--IGTVNSAENELELAAPIAAESLK 2381
>Z92788-6|CAD90176.2| 4944|Caenorhabditis elegans Hypothetical protein
ZK1151.1b protein.
Length = 4944
Score = 27.9 bits (59), Expect = 8.9
Identities = 20/86 (23%), Positives = 40/86 (46%)
Frame = +3
Query: 513 GIINNSCNNSKDATTNSEIRNKNNASVSFIDKTPCRIEKSSIDSTNASNEWLVPKSERND 692
GI+ + DAT +EI+ + + D+ +IE + NA NE L + + ++
Sbjct: 2298 GILEATEELEVDATNRAEIQEQLETTQKKADELERKIENVKKAALNAQNEGLELEKKLDE 2357
Query: 693 ATEIVSVNEKEDDSNVKCGVCLEAFR 770
I +VN E++ + + E+ +
Sbjct: 2358 L--IGTVNSAENELELAAPIAAESLK 2381
>Z49069-1|CAA88864.1| 1696|Caenorhabditis elegans Hypothetical protein
K12D12.2 protein.
Length = 1696
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Frame = +3
Query: 624 EKSSIDSTNASNEW----LVPKSERNDATEIVSVNEKEDD 731
EK+SID+ N + EW L+ E + EIV++ +K D
Sbjct: 1388 EKNSIDTVNEAEEWLLDGLIAPLETPSSDEIVNIVDKMAD 1427
>AL031637-4|CAD90184.2| 4955|Caenorhabditis elegans Hypothetical
protein ZK1151.1c protein.
Length = 4955
Score = 27.9 bits (59), Expect = 8.9
Identities = 20/86 (23%), Positives = 40/86 (46%)
Frame = +3
Query: 513 GIINNSCNNSKDATTNSEIRNKNNASVSFIDKTPCRIEKSSIDSTNASNEWLVPKSERND 692
GI+ + DAT +EI+ + + D+ +IE + NA NE L + + ++
Sbjct: 2298 GILEATEELEVDATNRAEIQEQLETTQKKADELERKIENVKKAALNAQNEGLELEKKLDE 2357
Query: 693 ATEIVSVNEKEDDSNVKCGVCLEAFR 770
I +VN E++ + + E+ +
Sbjct: 2358 L--IGTVNSAENELELAAPIAAESLK 2381
>AL031637-3|CAD90183.2| 4944|Caenorhabditis elegans Hypothetical
protein ZK1151.1b protein.
Length = 4944
Score = 27.9 bits (59), Expect = 8.9
Identities = 20/86 (23%), Positives = 40/86 (46%)
Frame = +3
Query: 513 GIINNSCNNSKDATTNSEIRNKNNASVSFIDKTPCRIEKSSIDSTNASNEWLVPKSERND 692
GI+ + DAT +EI+ + + D+ +IE + NA NE L + + ++
Sbjct: 2298 GILEATEELEVDATNRAEIQEQLETTQKKADELERKIENVKKAALNAQNEGLELEKKLDE 2357
Query: 693 ATEIVSVNEKEDDSNVKCGVCLEAFR 770
I +VN E++ + + E+ +
Sbjct: 2358 L--IGTVNSAENELELAAPIAAESLK 2381
>AJ505905-1|CAD44516.1| 3522|Caenorhabditis elegans VAB-10B protein
protein.
Length = 3522
Score = 27.9 bits (59), Expect = 8.9
Identities = 20/86 (23%), Positives = 40/86 (46%)
Frame = +3
Query: 513 GIINNSCNNSKDATTNSEIRNKNNASVSFIDKTPCRIEKSSIDSTNASNEWLVPKSERND 692
GI+ + DAT +EI+ + + D+ +IE + NA NE L + + ++
Sbjct: 2298 GILEATEELEVDATNRAEIQEQLETTQKKADELERKIENVKKAALNAQNEGLELEKKLDE 2357
Query: 693 ATEIVSVNEKEDDSNVKCGVCLEAFR 770
I +VN E++ + + E+ +
Sbjct: 2358 L--IGTVNSAENELELAAPIAAESLK 2381
>AJ505816-1|CAD44324.1| 4944|Caenorhabditis elegans VAB-10B protein
protein.
Length = 4944
Score = 27.9 bits (59), Expect = 8.9
Identities = 20/86 (23%), Positives = 40/86 (46%)
Frame = +3
Query: 513 GIINNSCNNSKDATTNSEIRNKNNASVSFIDKTPCRIEKSSIDSTNASNEWLVPKSERND 692
GI+ + DAT +EI+ + + D+ +IE + NA NE L + + ++
Sbjct: 2298 GILEATEELEVDATNRAEIQEQLETTQKKADELERKIENVKKAALNAQNEGLELEKKLDE 2357
Query: 693 ATEIVSVNEKEDDSNVKCGVCLEAFR 770
I +VN E++ + + E+ +
Sbjct: 2358 L--IGTVNSAENELELAAPIAAESLK 2381
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,171,716
Number of Sequences: 27780
Number of extensions: 317180
Number of successful extensions: 1299
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1299
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -