Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0806
         (795 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    31   0.016
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   5.7  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    22   7.5  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           22   7.5  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   10.0 

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 30.7 bits (66), Expect = 0.016
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +1

Query: 337 KHRRNSGSMSTGKELEVIIEP--TNSKTSARVGRLQNDSNEKIPITERRSVSNSKRKQK 507
           K+++N GSMS  K L  +I+P   N + S    +      E+   T  + V +S+++QK
Sbjct: 754 KNKKNVGSMSRNKALLPVIKPANVNKEQSPNSTKETTPKKERKTATTTQPVISSRKEQK 812



 Score = 21.8 bits (44), Expect = 7.5
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = -3

Query: 334 C*SYYPWSYYELCLHHCRRQQQLRIY 257
           C  YYP     L LH  R + +  +Y
Sbjct: 720 CVRYYPRRKEWLYLHRARSESEFEMY 745


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +3

Query: 507 VGGIINNSCNNSKDATTNSEIRNKN 581
           +G  +NN   N++ A +N++  N+N
Sbjct: 404 LGANVNNLIKNTRCAKSNNQNNNQN 428


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 573 NKNNASVSFIDKTPCRIEKS 632
           N ++ S+ FID+TP  I  S
Sbjct: 307 NNDSNSLPFIDRTPIEIINS 326


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 573 NKNNASVSFIDKTPCRIEKS 632
           N ++ S+ FID+TP  I  S
Sbjct: 307 NNDSNSLPFIDRTPIEIINS 326


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 522 NNSCNNSKDATTNSEIRNKNN 584
           NNS   + +A TN+   N NN
Sbjct: 224 NNSTITAGNANTNASNNNNNN 244


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,694
Number of Sequences: 438
Number of extensions: 3976
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)