Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0805
         (748 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z81076-12|CAB03061.2|  161|Caenorhabditis elegans Hypothetical p...    28   6.1  

>Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical
           protein T20G5.1 protein.
          Length = 1681

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = +1

Query: 379 CYTTEN--NFIKL*KL*DT-PVIYIYLKTILKHNLAYYVMTNRINAYNKSFV 525
           CY  E   NF+K  KL D  P+I +  +  + H+L  Y+  N++  Y + FV
Sbjct: 755 CYDAERVKNFLKEAKLNDQLPLIIVCDRHNMVHDLVLYLYRNQLQKYIEVFV 806


>Z81076-12|CAB03061.2|  161|Caenorhabditis elegans Hypothetical
           protein F35C5.11 protein.
          Length = 161

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = -3

Query: 332 EMTQYLT*ITLI*SRMTAVKCCQCQKFIEIPRFLLHILVIFVINF-QFKVNCKRSSKID 159
           ++ Q+L  +  I S   A+KC QC    +IP+F  + L    I+      +CK++S  D
Sbjct: 3   QIFQFLIILAFITSSAYAIKCHQCGGAEKIPKFAKNALAKLNISVDSLYGDCKKTSGSD 61


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,234,617
Number of Sequences: 27780
Number of extensions: 298660
Number of successful extensions: 558
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)