Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0803
         (693 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter |Schizosa...    27   1.9  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    27   3.4  
SPCC737.04 |||S. pombe specific UPF0300 family protein 6|Schizos...    25   7.9  
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3...    25   7.9  

>SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 74  LKYCFSKYYINYVYLNAINGMQINSVQ 154
           L YC   Y+INY+  ++IN   ++ +Q
Sbjct: 33  LSYCCVSYFINYLDRSSINNAYLSGMQ 59


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -1

Query: 282  KLKKKQNCRYSPTLHTIFCSTSSRIEHAPHDHIMDPNATKYKHCTELI 139
            +LK+K+  R    +     S +SRI     D + DP   K++ CT  I
Sbjct: 1108 ELKEKEYKRLKGVIEKCLSSVASRINQIKCDWVTDPE--KFESCTSEI 1153


>SPCC737.04 |||S. pombe specific UPF0300 family protein
           6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 380 D*LITRQLHTYPHHNVRSHRGDVTPFPSAI 291
           D L T+++  Y  HN+   + D+TP+P  I
Sbjct: 393 DSLETKEMF-YLRHNIAGFQADLTPYPMRI 421


>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 378

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -3

Query: 565 LPLLTSIDKPETLTCSTNS*QYYKN 491
           LPLL +    + +TCS +S ++Y+N
Sbjct: 209 LPLLITHGTDDNVTCSDSSKEFYEN 233


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,748,951
Number of Sequences: 5004
Number of extensions: 53491
Number of successful extensions: 115
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)