Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0803
         (693 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36072| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.38 
SB_771| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.27)             28   8.3  

>SB_36072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 498

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
 Frame = -1

Query: 411 NYCIHIKHVM*LTYHASATYLSTSQCAITQGRCYTFSFRH*VIKLKKKQNCRYSP-TLHT 235
           +Y +H  H   LT+++  T L+      T+   YT    H           RYS  TL T
Sbjct: 288 HYTLHYLHCTLLTFYSHYTILTLHATHTTRYAHYTLPTLH------ATHTTRYSHYTLLT 341

Query: 234 IFCSTSSRIEHAPHDHIMDPNATKYKHCTEL 142
           ++ + ++R  H     +   +AT+Y H T L
Sbjct: 342 LYATHTTRYSHYTLRTLNATHATRYSHYTLL 372


>SB_771| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.27)
          Length = 506

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +2

Query: 587 FITHDIKRAMQLQAIHIALASSYLKNYCGYHIYMG 691
           F+T+D+ R +    + +    S++  Y GYH+ MG
Sbjct: 113 FLTNDLSRKLTQYHLIMGTTLSWVPPYHGYHLTMG 147


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,032,199
Number of Sequences: 59808
Number of extensions: 422354
Number of successful extensions: 873
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)