Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0803
         (693 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g35610.1 68414.m04421 DC1 domain-containing protein contains ...    28   5.1  
At5g61650.1 68418.m07735 cyclin family protein similar to cyclin...    27   8.9  
At2g46210.1 68415.m05746 delta-8 sphingolipid desaturase, putati...    27   8.9  
At1g55140.1 68414.m06297 URF 4-related weak similarity to URF 4 ...    27   8.9  

>At1g35610.1 68414.m04421 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 612

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -1

Query: 267 QNCRYSPTLHTIFCSTSSRIEHAPHDH--IMDPNATKY 160
           + C YS  LH +    S +++HA H+H  I+ P+  K+
Sbjct: 345 KKCNYS--LHEVCAGLSRKLDHALHNHTLILSPSPGKF 380


>At5g61650.1 68418.m07735 cyclin family protein similar to cyclin 2
           [Trypanosoma brucei] GI:7339572, cyclin 6 [Trypanosoma
           cruzi] GI:12005317; contains Pfam profile PF00134:
           Cyclin, N-terminal domain
          Length = 219

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -3

Query: 319 EMLHLFLPPLSDKIKKKTKL*VFPN 245
           +M  LFL P S KI  KTKL ++P+
Sbjct: 178 KMKSLFLEPSSFKISSKTKLVMYPH 202


>At2g46210.1 68415.m05746 delta-8 sphingolipid desaturase, putative
           similar to delta-8 sphingolipid desaturase GI:3819708
           from [Brassica napus]
          Length = 449

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
 Frame = -2

Query: 248 QLYTLYFVQRH---RGSNTRRMIISWTLTPLSTSIAPN 144
           Q + L F +RH   R  N   +++ WT  PL  S  PN
Sbjct: 269 QTFLLLFSKRHVPDRALNIAGILVFWTWFPLLVSFLPN 306


>At1g55140.1 68414.m06297 URF 4-related weak similarity to URF 4
           (GI:49224) [Synechococcus sp.]
          Length = 305

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -3

Query: 388 CYVINLSRVSYIPIHITMCDHTGEMLHLFLPPLS 287
           CYVI  ++  Y+ + +  C +     H   PPLS
Sbjct: 161 CYVILTNKFLYLSLAVLGCKNIYARRHFLFPPLS 194


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,231,017
Number of Sequences: 28952
Number of extensions: 270730
Number of successful extensions: 521
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)