Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0801
(519 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr 2|... 77 2e-15
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo... 73 3e-14
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ... 28 0.96
SPAC22H10.06c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 26 2.9
SPBC56F2.12 |ilv5||acetohydroxyacid reductoisomerase|Schizosacch... 26 2.9
SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa... 26 2.9
SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces pombe... 25 5.1
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 25 6.8
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch... 25 9.0
SPBC2A9.02 |||NAD dependent epimerase/dehydratase family protein... 25 9.0
>SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 781
Score = 77.0 bits (181), Expect = 2e-15
Identities = 41/87 (47%), Positives = 57/87 (65%), Gaps = 3/87 (3%)
Frame = +2
Query: 2 SDKSQT---LLQIITKFASAYCSTIEGTARNIETTELCGGARICYIFHETFGRTLDSIHP 172
SD+SQ LLQ + +FA+ + ++I+G + NI T EL GGAR+ IF+ F L+SI P
Sbjct: 354 SDQSQRGIILLQAMNRFANTFIASIDGNSSNIPTKELSGGARLYSIFNNVFTTALNSIDP 413
Query: 173 LVGLTRMDILTAIRNATGPRPALFVPE 253
L L+ +DI TAI N+TG R LF+ E
Sbjct: 414 LQNLSTVDIRTAILNSTGSRATLFLSE 440
Score = 74.5 bits (175), Expect = 8e-15
Identities = 37/88 (42%), Positives = 55/88 (62%)
Frame = +1
Query: 256 SFELLVKRQIRRLEDPSLRCVELVHEEMQRIVQHCGTEVQQEMLRFPRLHQRIVDVVTQL 435
+F++LVK Q+ L P +CVELV+EE+ +I + G ++ FP+L +V+ V+ L
Sbjct: 442 AFDILVKPQLNLLAAPCHQCVELVYEELMKICHYSG---DSDISHFPKLQTALVETVSDL 498
Query: 436 LRTRLPPTNSMVEKLVGIELAYINRSTP 519
LR L PT S VE L+ I+ AYIN + P
Sbjct: 499 LRENLTPTYSFVESLIAIQSAYINTNHP 526
>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
Vps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 72.5 bits (170), Expect = 3e-14
Identities = 31/81 (38%), Positives = 49/81 (60%)
Frame = +2
Query: 5 DKSQTLLQIITKFASAYCSTIEGTARNIETTELCGGARICYIFHETFGRTLDSIHPLVGL 184
D S +L +IT F + Y + ++G + + TEL GGARI ++FHE F + +I P +
Sbjct: 338 DNSSIVLNLITDFCNEYRTVVDGRSEELSATELSGGARIAFVFHEIFSNGIQAIDPFDEV 397
Query: 185 TRMDILTAIRNATGPRPALFV 247
DI T + N++GP P+LF+
Sbjct: 398 KDSDIRTILYNSSGPSPSLFM 418
Score = 69.7 bits (163), Expect = 2e-13
Identities = 36/89 (40%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
Frame = +1
Query: 256 SFELLVKRQIRRLEDPSLRCVELVHEEMQRIVQHCGTEVQQEML-RFPRLHQRIVDVVTQ 432
+FE++VK+QI+RLEDPSL+CV L+++E+ RI+ +Q+ + R+P L VV
Sbjct: 422 AFEVIVKQQIKRLEDPSLKCVSLIYDELVRILNQL---LQRPIFKRYPLLKDEFYKVVIG 478
Query: 433 LLRTRLPPTNSMVEKLVGIELAYINRSTP 519
R + PTN++V +V +E +YIN P
Sbjct: 479 FFRKCMQPTNTLVMDMVAMEGSYINTVHP 507
>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 774
Score = 27.9 bits (59), Expect = 0.96
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Frame = +2
Query: 227 PRPALFVPEDL-LSFWSSDRLEDWKTLRYVVLN----WYTKKCRGSFSTVAQKSSRKCYV 391
P+ L E+ SF+S+D + T+ Y L Y K CR F + KS +
Sbjct: 106 PKENLVTSEECKASFFSTDSVNKDSTIDYDALQKDPLTYVKSCRARFVSKDTKSFSYSSL 165
Query: 392 SHACTNASSTSSR 430
++ + SST SR
Sbjct: 166 ANTFSLISSTKSR 178
>SPAC22H10.06c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 93
Score = 26.2 bits (55), Expect = 2.9
Identities = 12/48 (25%), Positives = 22/48 (45%)
Frame = -2
Query: 191 CGSNLLKDVWSPKCVQKSRGIYNRFWRRHKVQWSQCSGLYLLLSNSKH 48
C + +D+W KC+ R +Y V W+Q + + L ++H
Sbjct: 3 CRYRICRDIWRGKCIYVFRCLYT---NHAVVSWNQTNEVIGLYKANEH 47
>SPBC56F2.12 |ilv5||acetohydroxyacid
reductoisomerase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 26.2 bits (55), Expect = 2.9
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 131 FHETFGRTLDSIHPLVGLTRMDILTAIRNATGPRPAL 241
F+ET S++PL+G +D + A + T R A+
Sbjct: 296 FNETVEEATQSLYPLIGKYGLDYMFAACSTTARRGAI 332
>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
Ght7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 518
Score = 26.2 bits (55), Expect = 2.9
Identities = 12/23 (52%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Frame = +2
Query: 110 GARICYIF-HETFGRTLDSIHPL 175
GA I ++F HET GRTL+ I+ +
Sbjct: 414 GAAIIFLFVHETKGRTLEEINTM 436
>SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 408
Score = 25.4 bits (53), Expect = 5.1
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -1
Query: 489 DTHQFLHHRIGRRQSSPQQLRDDVDDALV 403
++HQ L H +Q SP RDD A V
Sbjct: 17 ESHQILRHLFLNKQYSPLVKRDDDSSATV 45
>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +2
Query: 200 LTAIRNATGPRPALFVPEDLLSFWSSDR 283
L +I T +P L V EDL +W +
Sbjct: 426 LLSINTITDNKPVLHVQEDLCKWWKESK 453
>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 979
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/48 (22%), Positives = 26/48 (54%)
Frame = +1
Query: 319 ELVHEEMQRIVQHCGTEVQQEMLRFPRLHQRIVDVVTQLLRTRLPPTN 462
EL +++ ++ + +V+++ ++ +HQR+ +LLR L N
Sbjct: 762 ELGVDDVNDLISYVYHDVERQSVKLLEIHQRLQRHFVELLRPALSERN 809
>SPBC2A9.02 |||NAD dependent epimerase/dehydratase family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 295
Score = 24.6 bits (51), Expect = 9.0
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +2
Query: 125 YIFHETFGRTLDSIHPLVGLTRMDILTAIRNATGPRPALFVPEDL 259
+I E + L++ H +VGL R + A A G P + EDL
Sbjct: 11 FIGSEIVRQLLEAGHEVVGLVRSEENAAKLRAAGGTPYIGTLEDL 55
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,218,455
Number of Sequences: 5004
Number of extensions: 44851
Number of successful extensions: 133
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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