Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0801
(519 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1828 - 40174446-40174543,40175031-40175171,40176518-401767... 85 3e-17
04_03_0684 - 18670697-18670933,18671003-18671102,18671214-186712... 71 4e-13
02_05_0684 - 30880527-30880753,30881952-30882124,30882687-308827... 39 0.002
06_01_0989 + 7672764-7672904,7673017-7673067,7673176-7673296,767... 34 0.079
10_08_0977 - 21985149-21985277,21985348-21985722,21985824-219858... 30 0.97
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119... 28 5.2
10_08_0973 - 21963754-21963936,21964089-21964383,21964504-219646... 28 5.2
08_02_1363 + 26410606-26410680,26411728-26411843,26411927-264119... 27 9.0
08_02_0721 + 20401217-20401360,20401689-20401809,20401969-204020... 27 9.0
04_04_0502 - 25686982-25688361 27 9.0
>01_06_1828 -
40174446-40174543,40175031-40175171,40176518-40176719,
40176815-40176914,40177029-40177081,40177951-40178097,
40178184-40178341,40178509-40178599,40179415-40179522,
40179815-40179952,40180154-40180246,40180342-40180434,
40180528-40180637,40181087-40181135,40181324-40181437,
40181530-40181589,40181674-40181742,40182034-40182135,
40182235-40182263,40182348-40182630,40183574-40183960
Length = 874
Score = 85.0 bits (201), Expect = 3e-17
Identities = 40/78 (51%), Positives = 52/78 (66%)
Frame = +2
Query: 20 LLQIITKFASAYCSTIEGTARNIETTELCGGARICYIFHETFGRTLDSIHPLVGLTRMDI 199
LL I+ K+ A+ S +EG +I T ELCGGARI YIF + ++L+ + P +T DI
Sbjct: 355 LLNILAKYCEAFSSMVEGKNEDISTIELCGGARIHYIFQSIYVKSLEDVDPCEDVTDEDI 414
Query: 200 LTAIRNATGPRPALFVPE 253
AI+NATGPR ALFVPE
Sbjct: 415 RMAIQNATGPRSALFVPE 432
Score = 66.5 bits (155), Expect = 1e-11
Identities = 32/87 (36%), Positives = 53/87 (60%)
Frame = +1
Query: 259 FELLVKRQIRRLEDPSLRCVELVHEEMQRIVQHCGTEVQQEMLRFPRLHQRIVDVVTQLL 438
FE+LV+RQI RL DPSL+C +++E+ ++ C + E+ +FP L + + +V+ + L
Sbjct: 435 FEVLVRRQISRLLDPSLQCAGFIYDELVKMSHRC---LAVELQQFPLLRRSMDEVIGRFL 491
Query: 439 RTRLPPTNSMVEKLVGIELAYINRSTP 519
R L P M+ ++ +E YIN S P
Sbjct: 492 RDGLKPAQDMIAHIIEMEADYINTSHP 518
>04_03_0684 -
18670697-18670933,18671003-18671102,18671214-18671266,
18671664-18671810,18671901-18672031,18673064-18673088,
18673201-18673305,18673941-18674054,18674900-18674992,
18675101-18675193,18675951-18676057,18676442-18676490,
18677140-18677253,18677728-18677787,18677887-18677955,
18679154-18679255,18679338-18679366,18679450-18679732,
18680399-18680752
Length = 754
Score = 71.3 bits (167), Expect = 4e-13
Identities = 34/78 (43%), Positives = 50/78 (64%)
Frame = +2
Query: 20 LLQIITKFASAYCSTIEGTARNIETTELCGGARICYIFHETFGRTLDSIHPLVGLTRMDI 199
LL I+ K+ A+ S +EG + + T EL GGARI YIF F ++L+ + P +T DI
Sbjct: 344 LLNILRKYCEAFSSMVEGKNK-VSTDELSGGARIHYIFQSIFVKSLEEVDPCKSITDEDI 402
Query: 200 LTAIRNATGPRPALFVPE 253
TAI+N+ GP+ +F+PE
Sbjct: 403 RTAIQNSDGPKGPMFLPE 420
Score = 39.5 bits (88), Expect = 0.002
Identities = 15/30 (50%), Positives = 24/30 (80%)
Frame = +1
Query: 259 FELLVKRQIRRLEDPSLRCVELVHEEMQRI 348
FE+LV+RQI RL DPSL+C +++E+ ++
Sbjct: 423 FEILVRRQISRLLDPSLQCANFIYDELVKM 452
>02_05_0684 -
30880527-30880753,30881952-30882124,30882687-30882754,
30882860-30882973,30883281-30883438,30883516-30883654,
30883851-30883907,30884064-30884140,30884324-30884462,
30884590-30884668,30885047-30885174,30885269-30885352,
30886072-30886191,30886274-30886375,30886470-30886617,
30887404-30887749,30887851-30887968,30888309-30888370,
30888798-30888947,30889049-30889169,30889269-30889319,
30889427-30889567
Length = 933
Score = 39.1 bits (87), Expect = 0.002
Identities = 24/88 (27%), Positives = 40/88 (45%)
Frame = +1
Query: 241 IRP*GSFELLVKRQIRRLEDPSLRCVELVHEEMQRIVQHCGTEVQQEMLRFPRLHQRIVD 420
I P + L+K + ++PS CVE VH + IV + + R+P + +V+
Sbjct: 426 ISPEKGLKSLIKGVLEMAKEPSRLCVEEVHRVLLDIV-NASANATPGLGRYPPFKREVVE 484
Query: 421 VVTQLLRTRLPPTNSMVEKLVGIELAYI 504
+ T L MV LV +E A++
Sbjct: 485 IATNALDVFKSDAKKMVVALVDMERAFV 512
>06_01_0989 +
7672764-7672904,7673017-7673067,7673176-7673296,
7673406-7673510,7673963-7674024,7674398-7674515,
7674596-7674932,7675389-7675536,7675632-7675733,
7675824-7675943,7676436-7676519,7676622-7676749,
7677351-7677435,7677566-7677713,7677971-7678047,
7678187-7678243,7678423-7678561,7678642-7678796,
7679003-7679116,7679208-7679275,7679830-7679996,
7680245-7680453
Length = 911
Score = 33.9 bits (74), Expect = 0.079
Identities = 22/88 (25%), Positives = 39/88 (44%)
Frame = +1
Query: 241 IRP*GSFELLVKRQIRRLEDPSLRCVELVHEEMQRIVQHCGTEVQQEMLRFPRLHQRIVD 420
I P L+K + ++PS CVE VH + IV + + R+P + ++
Sbjct: 408 ISPEKGLRSLIKIVLDMAKEPSRLCVEEVHRVLLDIV-NASANATPGLGRYPPFKREVIA 466
Query: 421 VVTQLLRTRLPPTNSMVEKLVGIELAYI 504
+ + L + MV LV +E A++
Sbjct: 467 IASNALDSFKNDAKKMVVALVDMERAFV 494
>10_08_0977 -
21985149-21985277,21985348-21985722,21985824-21985874,
21985964-21986189,21986289-21986359,21986430-21986549,
21986641-21986835,21986921-21986985,21987894-21987984,
21988700-21988761,21988854-21988904,21989172-21989273,
21989873-21989980,21990071-21990134,21990246-21990392
Length = 618
Score = 30.3 bits (65), Expect = 0.97
Identities = 21/88 (23%), Positives = 36/88 (40%)
Frame = +1
Query: 241 IRP*GSFELLVKRQIRRLEDPSLRCVELVHEEMQRIVQHCGTEVQQEMLRFPRLHQRIVD 420
I P + L++ + P+ V+ VH ++ +V+ E Q E+ RFP L +
Sbjct: 407 IAPEQGYRRLIESALNYFRGPAEASVDAVHYVLKELVRKSIGETQ-ELKRFPTLQAELAA 465
Query: 421 VVTQLLRTRLPPTNSMVEKLVGIELAYI 504
L +LV +E AY+
Sbjct: 466 ACFHALERFREDGRKTTVRLVDMESAYL 493
>11_06_0458 + 23808402-23808469,23808800-23809684,23810011-23811961,
23812210-23812285,23813064-23813072,23813243-23813335,
23813578-23813581,23813780-23814703,23814926-23815909,
23816073-23816118,23816376-23816951,23817253-23817798,
23817820-23818416
Length = 2252
Score = 27.9 bits (59), Expect = 5.2
Identities = 26/98 (26%), Positives = 35/98 (35%)
Frame = +2
Query: 44 ASAYCSTIEGTARNIETTELCGGARICYIFHETFGRTLDSIHPLVGLTRMDILTAIRNAT 223
A + CS GT E L +C F FG L + D+ T I
Sbjct: 1377 AKSCCSPDHGTV--YELRPLSEADSMCLFFRRIFGS-----EDLCPVNLKDVSTEIIKKC 1429
Query: 224 GPRPALFVPEDLLSFWSSDRLEDWKTLRYVVLNWYTKK 337
G P + L SDR E+W +R + + KK
Sbjct: 1430 GGLPLAIITMASLLADKSDRREEWVRIRNSIGSGLEKK 1467
>10_08_0973 -
21963754-21963936,21964089-21964383,21964504-21964616,
21964729-21964913,21965054-21965201,21965297-21965575,
21965657-21965761,21965936-21966178,21966426-21966486,
21966734-21966792
Length = 556
Score = 27.9 bits (59), Expect = 5.2
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +1
Query: 349 VQHCGTEVQQEMLRFPRLHQRIVDVVTQLLR 441
+Q+C +Q++L LH ++V+V+ L R
Sbjct: 101 IQYCDWRARQDLLTIMVLHNKVVEVLNPLAR 131
>08_02_1363 +
26410606-26410680,26411728-26411843,26411927-26411989,
26412067-26412103,26412193-26412274,26412747-26412865,
26412942-26413037,26413609-26413719,26413792-26413893,
26414053-26414100,26414230-26414445,26414547-26414675
Length = 397
Score = 27.1 bits (57), Expect = 9.0
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -2
Query: 176 LKDVWSPKCVQKSRGIYNRFWRRHKVQWSQCSG 78
++DVW+ RGI N W R K+Q S C G
Sbjct: 367 VEDVWN------LRGILNTSWHRIKIQNSSCVG 393
>08_02_0721 +
20401217-20401360,20401689-20401809,20401969-20402067,
20402790-20402851,20403680-20403797,20404004-20404343,
20404435-20404582,20405043-20405144,20405240-20405359,
20405812-20405895,20405974-20406101,20408314-20408389,
20408556-20408631,20408800-20408876,20408975-20409031,
20409411-20409555,20409634-20409806,20409928-20410054,
20410090-20410192,20410492-20410688,20410946-20411097
Length = 882
Score = 27.1 bits (57), Expect = 9.0
Identities = 20/88 (22%), Positives = 37/88 (42%)
Frame = +1
Query: 241 IRP*GSFELLVKRQIRRLEDPSLRCVELVHEEMQRIVQHCGTEVQQEMLRFPRLHQRIVD 420
I P L+K + ++PS+ V+ VH + IV + R+P + ++
Sbjct: 391 ISPEKGLRSLIKGLLELAKEPSILLVDEVHRVLLDIVS-ATANATPGLGRYPLFKREVIA 449
Query: 421 VVTQLLRTRLPPTNSMVEKLVGIELAYI 504
+ + L MV LV +E A++
Sbjct: 450 IGSAALDGFKDEAKKMVIALVDMERAFV 477
>04_04_0502 - 25686982-25688361
Length = 459
Score = 27.1 bits (57), Expect = 9.0
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = -2
Query: 500 YASSIPTSFSTIELVGGNLVLSSCVTTSTMRWC 402
Y S +P+ I ++ GN+++S V WC
Sbjct: 367 YWSRMPSHVPNIRVIPGNVIMSVTVIVYDQSWC 399
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,993,365
Number of Sequences: 37544
Number of extensions: 313059
Number of successful extensions: 940
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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