Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0801
         (519 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   3.3  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   4.3  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   5.7  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +2

Query: 62  TIEGTARNIETTELC 106
           TI G   NIE TELC
Sbjct: 202 TIIGDPANIEFTELC 216


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -2

Query: 482 TSFSTIELVGGNLVLSSCVTTSTMR 408
           T    + +VG  LV+++ +TT  +R
Sbjct: 45  TMLIIVTIVGNTLVIAAVITTRRLR 69


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -1

Query: 462 IGRRQSSPQQLRDDVD 415
           +GR Q++ Q L DDV+
Sbjct: 184 LGRFQTTSQNLEDDVE 199


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,619
Number of Sequences: 438
Number of extensions: 3344
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14477538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)