Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0798
         (723 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.10c |alg5||dolichyl-phosphate beta-glucosyltransferase ...    47   2e-06
SPAC31G5.16c |dpm1||dolichol-phosphate mannosyltransferase catal...    29   0.67 
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    27   3.6  
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac...    26   4.7  
SPBC2A9.11c ||SPBC2D10.01c|nuclear export factor|Schizosaccharom...    25   8.3  

>SPBC56F2.10c |alg5||dolichyl-phosphate beta-glucosyltransferase
           Alg5 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 47.2 bits (107), Expect = 2e-06
 Identities = 38/106 (35%), Positives = 52/106 (49%), Gaps = 4/106 (3%)
 Frame = +2

Query: 413 PAYNEEKRLPPMLDETIEFLENRQKENPSY---KYE*S**VTEVKTAQLK*PRATP*NMV 583
           PAYNE KR+  ML ET++ LE   + + S    ++E      E K   +         + 
Sbjct: 69  PAYNESKRIGNMLQETVDHLEKYYRSSSSAGQRRWEILIVDDESKDTTVNAVLEFSNKLD 128

Query: 584 VTK*-NA*S**RTEEKGGAVRLGIQSSRGATILFADADGASKFEDL 718
           +       S  R   KGGAV  G+  +RG   +FADADGAS+F DL
Sbjct: 129 LRDHLRVCSLKRNRGKGGAVTWGMLYARGQYAIFADADGASQFSDL 174


>SPAC31G5.16c |dpm1||dolichol-phosphate mannosyltransferase
           catalytic subunit Dpm1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 29.1 bits (62), Expect = 0.67
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 511 IIIVSDGSKDSTVKVAESYSIKYGSDKV 594
           I+I+ D S D T +VA+     YG DK+
Sbjct: 37  IVIIDDASPDGTQEVAKELQKIYGEDKI 64


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
 Frame = +3

Query: 375 YLKKNLLT*V*LFLHIMKKKDC-----HPCWMKQLSSWRT 479
           YL  N L+      H +KK  C     HPC ++++ +WRT
Sbjct: 328 YLDSNPLSIQRTITHFIKKLVCNECSMHPCDIEEIIAWRT 367


>SPAC18B11.10 |tup11||transcriptional corepressor
           Tup11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 20/62 (32%), Positives = 28/62 (45%)
 Frame = +1

Query: 517 IVSDGSKDSTVKVAESYSIKYGSDKVKCLELIKNRGKRRSSQTGHTKFERCNDIVCRCRW 696
           I+  GS D T+KV E  + +        L  IK  G  +++ TGHT F     +    RW
Sbjct: 498 ILLSGSLDKTIKVWELQATRSVG-----LSAIKPEGICKATYTGHTDFVLSVAVSPDSRW 552

Query: 697 CL 702
            L
Sbjct: 553 GL 554


>SPBC2A9.11c ||SPBC2D10.01c|nuclear export
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 443 PMLDETIEFLENRQKENPSYKY 508
           P+L +T+E L+ + KE  +Y Y
Sbjct: 159 PVLKQTLELLKKKWKEEKNYAY 180


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,667,064
Number of Sequences: 5004
Number of extensions: 49152
Number of successful extensions: 121
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)