Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0798
         (723 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0489 - 34284301-34284336,34285104-34285227,34285307-342853...    56   3e-08
02_01_0699 - 5220896-5221345,5221403-5221504,5221694-5222343,522...    29   3.7  
03_06_0508 + 34417540-34417649,34418239-34418338,34418445-344184...    29   4.9  

>03_06_0489 -
           34284301-34284336,34285104-34285227,34285307-34285371,
           34285472-34285555,34285661-34285789,34285887-34285976,
           34286116-34286250,34286939-34286984,34287119-34287225,
           34287355-34287412,34287524-34287765
          Length = 371

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 45/133 (33%), Positives = 56/133 (42%), Gaps = 4/133 (3%)
 Frame = +2

Query: 332 YNDYLTNTKLRFPSIXXXXXXXXXXXXPAYNEEKRLPPMLDETIEFLENRQKENPSYKYE 511
           + D  +  K+R PSI            PAYNEE RLP  L ET+ +L+ R     S+ YE
Sbjct: 92  FEDPNSLNKVRCPSIYDPAEKYISLIIPAYNEEHRLPEALTETLNYLKQRSAVEKSFTYE 151

Query: 512 *S**VTEVKTAQLK*PRATP*NMV----VTK*NA*S**RTEEKGGAVRLGIQSSRGATIL 679
               V  V               V    +         R   KG AVR G+  SRG  +L
Sbjct: 152 ----VLIVDDGSTDHTSKVAFEFVRKHKIDNVRVLLLGRNHGKGEAVRKGMLHSRGELLL 207

Query: 680 FADADGASKFEDL 718
             DADGA+K  DL
Sbjct: 208 MLDADGATKVTDL 220



 Score = 36.7 bits (81), Expect = 0.019
 Identities = 19/46 (41%), Positives = 27/46 (58%)
 Frame = +1

Query: 511 IIIVSDGSKDSTVKVAESYSIKYGSDKVKCLELIKNRGKRRSSQTG 648
           ++IV DGS D T KVA  +  K+  D V+ L L +N GK  + + G
Sbjct: 152 VLIVDDGSTDHTSKVAFEFVRKHKIDNVRVLLLGRNHGKGEAVRKG 197


>02_01_0699 - 5220896-5221345,5221403-5221504,5221694-5222343,
            5222445-5222793,5223189-5223510,5223621-5224123,
            5224486-5224578,5224708-5224759,5224837-5225129,
            5225208-5225630,5225734-5226070,5226185-5226220,
            5226272-5226589,5227465-5228450
          Length = 1637

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +2

Query: 290  DTYPVVERYKDEETYND 340
            ++YP VERY D + YND
Sbjct: 1409 ESYPEVERYSDNDIYND 1425


>03_06_0508 +
           34417540-34417649,34418239-34418338,34418445-34418478,
           34418559-34418635,34418929-34419005,34419060-34419224,
           34419306-34419420,34419546-34419650
          Length = 260

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 484 KRKPFIQI*IIIVSDGSKDSTVKVAESYSIKYGSDKV 594
           K  P +   II+V DGS D T  + +     YG ++V
Sbjct: 34  KHLPDVNFEIIVVDDGSPDGTQDIVKQLQQIYGENRV 70


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,636,940
Number of Sequences: 37544
Number of extensions: 266283
Number of successful extensions: 545
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)