Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0798
         (723 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125965-1|AAL38962.1|  339|Caenorhabditis elegans Hypothetical ...    53   2e-07
AF098501-3|AAM69106.1|  275|Caenorhabditis elegans Hypothetical ...    32   0.36 
AF098501-2|AAM69105.1|  298|Caenorhabditis elegans Hypothetical ...    32   0.36 
AF098501-1|AAC67404.2|  548|Caenorhabditis elegans Hypothetical ...    32   0.36 
AF125462-6|AAD12857.2|  239|Caenorhabditis elegans Hypothetical ...    29   4.4  

>AF125965-1|AAL38962.1|  339|Caenorhabditis elegans Hypothetical
           protein H43I07.3 protein.
          Length = 339

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 39/104 (37%), Positives = 55/104 (52%), Gaps = 3/104 (2%)
 Frame = +2

Query: 413 PAYNEEKRLPPMLDETIEFLENRQKENPSYKYE*---S**VTEVKTAQLK*PRATP*NMV 583
           PA NE +R+  MLD+  ++LE R +++  + YE        T+     +    A   N+ 
Sbjct: 88  PAMNEVERIEIMLDDCCDYLEARAEKDKDFTYEIIVVDDGSTDETADIVVQIGARRQNLR 147

Query: 584 VTK*NA*S**RTEEKGGAVRLGIQSSRGATILFADADGASKFED 715
           V K  A        KGGAV++G+  S G  ILFADADGA+KF D
Sbjct: 148 VLKMKA-----NRGKGGAVKMGVLHSSGKLILFADADGATKFAD 186


>AF098501-3|AAM69106.1|  275|Caenorhabditis elegans Hypothetical
           protein H28G03.2c protein.
          Length = 275

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 420 IMKKKDCHPCWMKQLSSWRTDKKKTLHTNMNNHSE 524
           I+KKK+     M+ +++W  +K K +H NM  H +
Sbjct: 4   IVKKKEAMKKQMEDMAAWELEKIKRIHANMPRHMQ 38


>AF098501-2|AAM69105.1|  298|Caenorhabditis elegans Hypothetical
           protein H28G03.2b protein.
          Length = 298

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 420 IMKKKDCHPCWMKQLSSWRTDKKKTLHTNMNNHSE 524
           I+KKK+     M+ +++W  +K K +H NM  H +
Sbjct: 27  IVKKKEAMKKQMEDMAAWELEKIKRIHANMPRHMQ 61


>AF098501-1|AAC67404.2|  548|Caenorhabditis elegans Hypothetical
           protein H28G03.2a protein.
          Length = 548

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 420 IMKKKDCHPCWMKQLSSWRTDKKKTLHTNMNNHSE 524
           I+KKK+     M+ +++W  +K K +H NM  H +
Sbjct: 277 IVKKKEAMKKQMEDMAAWELEKIKRIHANMPRHMQ 311


>AF125462-6|AAD12857.2|  239|Caenorhabditis elegans Hypothetical
           protein Y66H1A.2 protein.
          Length = 239

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 511 IIIVSDGSKDSTVKVAESYSIKYGSDKV 594
           +IIV D S D T  +A+    +YG DK+
Sbjct: 38  VIIVDDASPDGTQGIAKLLQKEYGDDKI 65


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,413,240
Number of Sequences: 27780
Number of extensions: 266965
Number of successful extensions: 676
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)