Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0798
(723 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.2
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.2
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.2
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.2
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.2
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.2
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 23 2.2
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 23 2.2
DQ325076-1|ABD14090.1| 191|Apis mellifera complementary sex det... 23 2.9
AY352276-1|AAQ67417.1| 385|Apis mellifera complementary sex det... 23 3.9
AB253416-1|BAE86927.1| 580|Apis mellifera alpha-glucosidase pro... 22 5.1
DQ325113-1|ABD14127.1| 185|Apis mellifera complementary sex det... 21 8.9
DQ325112-1|ABD14126.1| 185|Apis mellifera complementary sex det... 21 8.9
DQ325111-1|ABD14125.1| 185|Apis mellifera complementary sex det... 21 8.9
DQ325110-1|ABD14124.1| 185|Apis mellifera complementary sex det... 21 8.9
DQ325087-1|ABD14101.1| 179|Apis mellifera complementary sex det... 21 8.9
DQ325086-1|ABD14100.1| 179|Apis mellifera complementary sex det... 21 8.9
DQ325085-1|ABD14099.1| 179|Apis mellifera complementary sex det... 21 8.9
DQ325084-1|ABD14098.1| 179|Apis mellifera complementary sex det... 21 8.9
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.2
Identities = 10/27 (37%), Positives = 12/27 (44%)
Frame = +3
Query: 603 RVNKEQRKKEEQSDWAYKVREVQRYCL 683
R+ K E SDW + V R CL
Sbjct: 411 RMKKADESDEIISDWKFAAMVVDRLCL 437
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.2
Identities = 10/27 (37%), Positives = 12/27 (44%)
Frame = +3
Query: 603 RVNKEQRKKEEQSDWAYKVREVQRYCL 683
R+ K E SDW + V R CL
Sbjct: 411 RMKKADESDEIISDWKFAAMVVDRLCL 437
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.2
Identities = 10/27 (37%), Positives = 12/27 (44%)
Frame = +3
Query: 603 RVNKEQRKKEEQSDWAYKVREVQRYCL 683
R+ K E SDW + V R CL
Sbjct: 411 RMKKADESDEIISDWKFAAMVVDRLCL 437
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.2
Identities = 10/27 (37%), Positives = 12/27 (44%)
Frame = +3
Query: 603 RVNKEQRKKEEQSDWAYKVREVQRYCL 683
R+ K E SDW + V R CL
Sbjct: 411 RMKKADESDEIISDWKFAAMVVDRLCL 437
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.2
Identities = 10/27 (37%), Positives = 12/27 (44%)
Frame = +3
Query: 603 RVNKEQRKKEEQSDWAYKVREVQRYCL 683
R+ K E SDW + V R CL
Sbjct: 411 RMKKADESDEIISDWKFAAMVVDRLCL 437
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.2
Identities = 10/27 (37%), Positives = 12/27 (44%)
Frame = +3
Query: 603 RVNKEQRKKEEQSDWAYKVREVQRYCL 683
R+ K E SDW + V R CL
Sbjct: 411 RMKKADESDEIISDWKFAAMVVDRLCL 437
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.4 bits (48), Expect = 2.2
Identities = 10/27 (37%), Positives = 12/27 (44%)
Frame = +3
Query: 603 RVNKEQRKKEEQSDWAYKVREVQRYCL 683
R+ K E SDW + V R CL
Sbjct: 479 RMKKADESDEIISDWKFAAMVVDRLCL 505
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.4 bits (48), Expect = 2.2
Identities = 10/27 (37%), Positives = 12/27 (44%)
Frame = +3
Query: 603 RVNKEQRKKEEQSDWAYKVREVQRYCL 683
R+ K E SDW + V R CL
Sbjct: 479 RMKKADESDEIISDWKFAAMVVDRLCL 505
>DQ325076-1|ABD14090.1| 191|Apis mellifera complementary sex
determiner protein.
Length = 191
Score = 23.0 bits (47), Expect = 2.9
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 419 YNEEKRLPPMLDETIEFLENRQKENPSYKYE 511
YNE+++L + +R++E SYK E
Sbjct: 23 YNEKEKLLEERTSRKRYSRSREREQKSYKNE 53
>AY352276-1|AAQ67417.1| 385|Apis mellifera complementary sex
determiner protein.
Length = 385
Score = 22.6 bits (46), Expect = 3.9
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 419 YNEEKRLPPMLDETIEFLENRQKENPSYKYE 511
+NE+K+L + +R++E SYK E
Sbjct: 256 HNEKKKLLEERTSRKRYSRSREREQKSYKNE 286
>AB253416-1|BAE86927.1| 580|Apis mellifera alpha-glucosidase
protein.
Length = 580
Score = 22.2 bits (45), Expect = 5.1
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2
Query: 326 LHLYTAPQQDTYRLL 282
+HLYT Q +TY +L
Sbjct: 254 VHLYTRDQSETYDVL 268
>DQ325113-1|ABD14127.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.4 bits (43), Expect = 8.9
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = +2
Query: 419 YNEEKRLPPMLDETIEFLENRQKENPSYKYE 511
YNE+++ + +R++E SYK E
Sbjct: 23 YNEKEKFLEEKTSRKRYSRSREREQKSYKNE 53
>DQ325112-1|ABD14126.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.4 bits (43), Expect = 8.9
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = +2
Query: 419 YNEEKRLPPMLDETIEFLENRQKENPSYKYE 511
YNE+++ + +R++E SYK E
Sbjct: 23 YNEKEKFLEEKTSRKRYSRSREREQKSYKNE 53
>DQ325111-1|ABD14125.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.4 bits (43), Expect = 8.9
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = +2
Query: 419 YNEEKRLPPMLDETIEFLENRQKENPSYKYE 511
YNE+++ + +R++E SYK E
Sbjct: 23 YNEKEKFLEEKTSRKRYSRSREREQKSYKNE 53
>DQ325110-1|ABD14124.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.4 bits (43), Expect = 8.9
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = +2
Query: 419 YNEEKRLPPMLDETIEFLENRQKENPSYKYE 511
YNE+++ + +R++E SYK E
Sbjct: 23 YNEKEKFLEEKTSRKRYSRSREREQKSYKNE 53
>DQ325087-1|ABD14101.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.4 bits (43), Expect = 8.9
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +2
Query: 422 NEEKRLPPMLDETIEFLENRQKENPSYKYE 511
NEE++L + +R++E SYK E
Sbjct: 24 NEEEKLLEERTSRKRYSRSREREQNSYKNE 53
>DQ325086-1|ABD14100.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.4 bits (43), Expect = 8.9
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +2
Query: 422 NEEKRLPPMLDETIEFLENRQKENPSYKYE 511
NEE++L + +R++E SYK E
Sbjct: 24 NEEEKLLEERTSRKRYSRSREREQNSYKNE 53
>DQ325085-1|ABD14099.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.4 bits (43), Expect = 8.9
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +2
Query: 422 NEEKRLPPMLDETIEFLENRQKENPSYKYE 511
NEE++L + +R++E SYK E
Sbjct: 24 NEEEKLLEERTSRKRYSRSREREQNSYKNE 53
>DQ325084-1|ABD14098.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.4 bits (43), Expect = 8.9
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +2
Query: 422 NEEKRLPPMLDETIEFLENRQKENPSYKYE 511
NEE++L + +R++E SYK E
Sbjct: 24 NEEEKLLEERTSRKRYSRSREREQNSYKNE 53
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,210
Number of Sequences: 438
Number of extensions: 4018
Number of successful extensions: 75
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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