Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0797
(627 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 162 2e-40
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 162 2e-40
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 154 6e-38
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 154 6e-38
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 138 2e-33
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 110 7e-25
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 110 7e-25
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 99 1e-21
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 65 3e-11
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 65 3e-11
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 63 2e-10
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 63 2e-10
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 63 2e-10
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 39 0.003
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 38 0.008
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 37 0.010
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 35 0.055
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 33 0.17
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 33 0.22
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 33 0.22
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 31 0.67
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 31 0.67
AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical... 31 0.67
Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical p... 29 2.1
Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical p... 29 2.1
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 3.6
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 162 bits (394), Expect = 2e-40
Identities = 77/85 (90%), Positives = 80/85 (94%)
Frame = +3
Query: 255 IDIALWKFETSKYYVTIIDAPLHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 434
IDIALWKFET+KYY+TIIDAP HRDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNGQ
Sbjct: 73 IDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQ 132
Query: 435 TREHALLAFTLGVKQLIVGVNKMDS 509
TREHALLA TLGVKQLIV NKMDS
Sbjct: 133 TREHALLAQTLGVKQLIVACNKMDS 157
Score = 154 bits (373), Expect = 6e-38
Identities = 71/72 (98%), Positives = 71/72 (98%)
Frame = +1
Query: 40 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 219
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 220 DKLKAERERGIT 255
DKLKAERERGIT
Sbjct: 61 DKLKAERERGIT 72
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/24 (70%), Positives = 19/24 (79%)
Frame = +2
Query: 509 TEPPYSEPRFEEIKKEVSSYIKKI 580
TEPP+SE RF EI EVS +IKKI
Sbjct: 158 TEPPFSEARFTEITNEVSGFIKKI 181
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +1
Query: 583 YNPAAVAFVPISGWH 627
YNP AV FVPISG++
Sbjct: 183 YNPKAVPFVPISGFN 197
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 162 bits (394), Expect = 2e-40
Identities = 77/85 (90%), Positives = 80/85 (94%)
Frame = +3
Query: 255 IDIALWKFETSKYYVTIIDAPLHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 434
IDIALWKFET+KYY+TIIDAP HRDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNGQ
Sbjct: 73 IDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQ 132
Query: 435 TREHALLAFTLGVKQLIVGVNKMDS 509
TREHALLA TLGVKQLIV NKMDS
Sbjct: 133 TREHALLAQTLGVKQLIVACNKMDS 157
Score = 154 bits (373), Expect = 6e-38
Identities = 71/72 (98%), Positives = 71/72 (98%)
Frame = +1
Query: 40 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 219
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 220 DKLKAERERGIT 255
DKLKAERERGIT
Sbjct: 61 DKLKAERERGIT 72
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/24 (70%), Positives = 19/24 (79%)
Frame = +2
Query: 509 TEPPYSEPRFEEIKKEVSSYIKKI 580
TEPP+SE RF EI EVS +IKKI
Sbjct: 158 TEPPFSEARFTEITNEVSGFIKKI 181
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +1
Query: 583 YNPAAVAFVPISGWH 627
YNP AV FVPISG++
Sbjct: 183 YNPKAVPFVPISGFN 197
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 154 bits (373), Expect = 6e-38
Identities = 71/72 (98%), Positives = 71/72 (98%)
Frame = +1
Query: 40 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 219
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 220 DKLKAERERGIT 255
DKLKAERERGIT
Sbjct: 61 DKLKAERERGIT 72
Score = 151 bits (366), Expect = 4e-37
Identities = 79/100 (79%), Positives = 83/100 (83%)
Frame = +3
Query: 255 IDIALWKFETSKYYVTIIDAPLHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 434
IDIALWKFET+KYY+TIIDAP HRDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNGQ
Sbjct: 73 IDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQ 132
Query: 435 TREHALLAFTLGVKQLIVGVNKMDSLNHHTVSPDLRKSRR 554
TREHALLA TLGVKQL+ SL T SPD SRR
Sbjct: 133 TREHALLAQTLGVKQLV-------SLRSPTRSPD--SSRR 163
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 154 bits (373), Expect = 6e-38
Identities = 71/72 (98%), Positives = 71/72 (98%)
Frame = +1
Query: 40 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 219
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 220 DKLKAERERGIT 255
DKLKAERERGIT
Sbjct: 61 DKLKAERERGIT 72
Score = 92.3 bits (219), Expect = 3e-19
Identities = 41/45 (91%), Positives = 44/45 (97%)
Frame = +3
Query: 255 IDIALWKFETSKYYVTIIDAPLHRDFIKNMITGTSQADCAVLIVA 389
IDIALWKFET+KYY+TIIDAP HRDFIKNMITGTSQADCAVL+VA
Sbjct: 73 IDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVA 117
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/24 (70%), Positives = 19/24 (79%)
Frame = +2
Query: 509 TEPPYSEPRFEEIKKEVSSYIKKI 580
TEPP+SE RF EI EVS +IKKI
Sbjct: 124 TEPPFSEARFTEITNEVSGFIKKI 147
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +1
Query: 583 YNPAAVAFVPISGWH 627
YNP AV FVPISG++
Sbjct: 149 YNPKAVPFVPISGFN 163
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 138 bits (335), Expect = 2e-33
Identities = 63/67 (94%), Positives = 64/67 (95%)
Frame = +1
Query: 40 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 219
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 220 DKLKAER 240
DKLK +
Sbjct: 61 DKLKVTK 67
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 110 bits (265), Expect = 7e-25
Identities = 52/87 (59%), Positives = 65/87 (74%)
Frame = +3
Query: 255 IDIALWKFETSKYYVTIIDAPLHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 434
+DI FETS + ++DAP H+DFI NMITGTSQAD A+L+V A TGEFE G GQ
Sbjct: 236 MDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEFETGFENGGQ 295
Query: 435 TREHALLAFTLGVKQLIVGVNKMDSLN 515
T+EHALL +LGV QLIV VNK+D+++
Sbjct: 296 TKEHALLLRSLGVTQLIVAVNKLDTVD 322
Score = 90.6 bits (215), Expect = 8e-19
Identities = 39/69 (56%), Positives = 52/69 (75%)
Frame = +1
Query: 49 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 228
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 167 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 226
Query: 229 KAERERGIT 255
+ ERERG+T
Sbjct: 227 EEERERGVT 235
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 110 bits (265), Expect = 7e-25
Identities = 52/87 (59%), Positives = 65/87 (74%)
Frame = +3
Query: 255 IDIALWKFETSKYYVTIIDAPLHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 434
+DI FETS + ++DAP H+DFI NMITGTSQAD A+L+V A TGEFE G GQ
Sbjct: 254 MDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEFETGFENGGQ 313
Query: 435 TREHALLAFTLGVKQLIVGVNKMDSLN 515
T+EHALL +LGV QLIV VNK+D+++
Sbjct: 314 TKEHALLLRSLGVTQLIVAVNKLDTVD 340
Score = 90.6 bits (215), Expect = 8e-19
Identities = 39/69 (56%), Positives = 52/69 (75%)
Frame = +1
Query: 49 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 228
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 185 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 244
Query: 229 KAERERGIT 255
+ ERERG+T
Sbjct: 245 EEERERGVT 253
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 99 bits (238), Expect = 1e-21
Identities = 44/84 (52%), Positives = 60/84 (71%)
Frame = +3
Query: 255 IDIALWKFETSKYYVTIIDAPLHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 434
+++ FET K + TI+DAP H+ F+ NMI G +QAD AVL+++A GEFE G + GQ
Sbjct: 175 VEVGRAYFETEKRHFTILDAPGHKSFVPNMIVGANQADLAVLVISARRGEFETGFDRGGQ 234
Query: 435 TREHALLAFTLGVKQLIVGVNKMD 506
TREH++L T GVK L++ VNKMD
Sbjct: 235 TREHSMLVKTAGVKHLVILVNKMD 258
Score = 83.0 bits (196), Expect = 2e-16
Identities = 36/71 (50%), Positives = 51/71 (71%)
Frame = +1
Query: 43 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 222
G K HIN+V +GHVD+GKST G L++ G +DKRT+EK+E+EA+E G+ S+ +W +D
Sbjct: 104 GTHKEHINMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKGRESWYLSWCMD 163
Query: 223 KLKAERERGIT 255
ERE+G T
Sbjct: 164 TNDEEREKGKT 174
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 65.3 bits (152), Expect = 3e-11
Identities = 37/84 (44%), Positives = 50/84 (59%)
Frame = +3
Query: 255 IDIALWKFETSKYYVTIIDAPLHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 434
I++A +E+ + D P H DFIKNMI GTSQ D AVL++AA G E Q
Sbjct: 96 INVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME-------Q 148
Query: 435 TREHALLAFTLGVKQLIVGVNKMD 506
T+EH +LA +GVK + + +NK D
Sbjct: 149 TKEHLILAKQVGVKNMAIFINKAD 172
Score = 28.7 bits (61), Expect = 3.6
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 52 KTHINIVVIGHVDSGKSTTT 111
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 65.3 bits (152), Expect = 3e-11
Identities = 37/84 (44%), Positives = 50/84 (59%)
Frame = +3
Query: 255 IDIALWKFETSKYYVTIIDAPLHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 434
I++A +E+ + D P H DFIKNMI GTSQ D AVL++AA G E Q
Sbjct: 96 INVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME-------Q 148
Query: 435 TREHALLAFTLGVKQLIVGVNKMD 506
T+EH +LA +GVK + + +NK D
Sbjct: 149 TKEHLILAKQVGVKNMAIFINKAD 172
Score = 28.7 bits (61), Expect = 3.6
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 52 KTHINIVVIGHVDSGKSTTT 111
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 62.9 bits (146), Expect = 2e-10
Identities = 36/82 (43%), Positives = 51/82 (62%), Gaps = 2/82 (2%)
Frame = +3
Query: 273 KFETSKYYVTIIDAPLHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHAL 452
++ET+K + ID P H D+IKNMITG +Q + A+L+VAA G QTREH L
Sbjct: 106 EYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP-------QTREHLL 158
Query: 453 LAFTLGV--KQLIVGVNKMDSL 512
LA +GV ++V +NK+D +
Sbjct: 159 LARQVGVPLDNIVVFMNKVDEV 180
Score = 36.3 bits (80), Expect = 0.018
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +1
Query: 46 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 216
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 45 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 104
Query: 217 LDKLKAER 240
L+ A+R
Sbjct: 105 LEYETAKR 112
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 62.9 bits (146), Expect = 2e-10
Identities = 36/82 (43%), Positives = 51/82 (62%), Gaps = 2/82 (2%)
Frame = +3
Query: 273 KFETSKYYVTIIDAPLHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHAL 452
++ET+K + ID P H D+IKNMITG +Q + A+L+VAA G QTREH L
Sbjct: 107 EYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP-------QTREHLL 159
Query: 453 LAFTLGV--KQLIVGVNKMDSL 512
LA +GV ++V +NK+D +
Sbjct: 160 LARQVGVPLDNIVVFMNKVDEV 181
Score = 36.3 bits (80), Expect = 0.018
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +1
Query: 46 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 216
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 105
Query: 217 LDKLKAER 240
L+ A+R
Sbjct: 106 LEYETAKR 113
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 62.9 bits (146), Expect = 2e-10
Identities = 36/82 (43%), Positives = 51/82 (62%), Gaps = 2/82 (2%)
Frame = +3
Query: 273 KFETSKYYVTIIDAPLHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHAL 452
++ET+K + ID P H D+IKNMITG +Q + A+L+VAA G QTREH L
Sbjct: 107 EYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP-------QTREHLL 159
Query: 453 LAFTLGV--KQLIVGVNKMDSL 512
LA +GV ++V +NK+D +
Sbjct: 160 LARQVGVPLDNIVVFMNKVDEV 181
Score = 36.3 bits (80), Expect = 0.018
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +1
Query: 46 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 216
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 105
Query: 217 LDKLKAER 240
L+ A+R
Sbjct: 106 LEYETAKR 113
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 38.7 bits (86), Expect = 0.003
Identities = 25/86 (29%), Positives = 43/86 (50%)
Frame = +3
Query: 297 VTIIDAPLHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 476
+ +ID P H I+ ++ ++ D A++I+ + AGI QT EH LLA
Sbjct: 74 LALIDCPGHSGLIRAVLAASTVFDMAIVII-----DVVAGIQP--QTAEHLLLASKFCPN 126
Query: 477 QLIVGVNKMDSLNHHTVSPDLRKSRR 554
++I+ +NK D +S +K R+
Sbjct: 127 RVIIVLNKCDLAEKSKISESAKKVRK 152
Score = 28.7 bits (61), Expect = 3.6
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +1
Query: 61 INIVVIGHVDSGKSTTT 111
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 37.5 bits (83), Expect = 0.008
Identities = 28/64 (43%), Positives = 33/64 (51%)
Frame = +1
Query: 64 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 243
NI VI HVD+GK+T T L+Y G I A + KG+ V D L ERE
Sbjct: 27 NIGVIAHVDAGKTTVTERLLYLAGAI---------HVAGHVDKGN----TVTDFLDIERE 73
Query: 244 RGIT 255
RGIT
Sbjct: 74 RGIT 77
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 37.1 bits (82), Expect = 0.010
Identities = 28/73 (38%), Positives = 33/73 (45%)
Frame = +3
Query: 297 VTIIDAPLHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 476
VT +D P H F G AD VL+VAA G E QT + A V
Sbjct: 206 VTFLDTPGHAAFASMRARGAKGADIVVLVVAADDGVKE-------QTAQSIKFAKDANV- 257
Query: 477 QLIVGVNKMDSLN 515
QL+V VNK+D N
Sbjct: 258 QLVVAVNKIDKPN 270
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 34.7 bits (76), Expect = 0.055
Identities = 21/64 (32%), Positives = 31/64 (48%)
Frame = +1
Query: 64 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 243
NI + H+DSGK+T T ++Y G ID + +G +D + ER+
Sbjct: 46 NIGISAHIDSGKTTVTERILYYAGRID----------SMHEVRGKDDVGATMDFMDLERQ 95
Query: 244 RGIT 255
RGIT
Sbjct: 96 RGIT 99
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 33.1 bits (72), Expect = 0.17
Identities = 23/64 (35%), Positives = 31/64 (48%)
Frame = +1
Query: 64 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 243
N ++ HVD GKST L+ CG + +K+ +LDKL+ ERE
Sbjct: 44 NFGIVAHVDHGKSTLADRLLEMCGAVPPG-----QKQ-------------MLDKLQVERE 85
Query: 244 RGIT 255
RGIT
Sbjct: 86 RGIT 89
Score = 30.7 bits (66), Expect = 0.89
Identities = 23/72 (31%), Positives = 34/72 (47%)
Frame = +3
Query: 291 YYVTIIDAPLHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLG 470
Y + +ID P H DF + + D +L+VAA G QT + LAF
Sbjct: 102 YLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAANQG-------VQAQTIANFWLAFEKN 154
Query: 471 VKQLIVGVNKMD 506
+ Q+I +NK+D
Sbjct: 155 I-QIIPVINKID 165
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.22
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +1
Query: 40 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 135
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.22
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +1
Query: 40 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 135
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 31.1 bits (67), Expect = 0.67
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +1
Query: 16 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 126
++IRD P K+ + V+G+VD+GKST G L +
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 31.1 bits (67), Expect = 0.67
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +1
Query: 16 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 126
++IRD P K+ + V+G+VD+GKST G L +
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical
protein Y54G2A.28 protein.
Length = 366
Score = 31.1 bits (67), Expect = 0.67
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = -3
Query: 499 LLTPTMSCLTPRVKASKACSRV*PFLEIPASNSPVPAATMSTA 371
L PT+SC+ + AS S P + PA N VP AT+S +
Sbjct: 13 LFDPTLSCMATQNSASATLSCANPTVAAPA-NDDVPEATLSVS 54
>Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical
protein F54D5.5b protein.
Length = 492
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 142 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 243
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 272 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 305
>Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical
protein F54D5.5a protein.
Length = 427
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 142 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 243
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 207 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 240
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 28.7 bits (61), Expect = 3.6
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +1
Query: 61 INIVVIGHVDSGKSTTT 111
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,277,182
Number of Sequences: 27780
Number of extensions: 289985
Number of successful extensions: 832
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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