Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0796
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    28   1.1  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    27   1.9  
SPBC13G1.09 |||bystin-family protein|Schizosaccharomyces pombe|c...    27   3.3  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      27   3.3  
SPBC365.13c |hba1|caf1|Ran GTPase binding protein Hba1|Schizosac...    26   5.8  
SPBC30B4.08 |eri1||double-strand siRNA ribonuclease|Schizosaccha...    26   5.8  
SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces po...    25   7.7  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   7.7  

>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -2

Query: 519 SLLVDINRNI*EFHFFIHTIPREFWF**VFLCFIYILNF 403
           S+L D++  +  F +FI ++P   WF    L ++Y L+F
Sbjct: 821 SVLNDVHPRVPNFRYFIWSVPMNNWF--QSLVWLYTLSF 857


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 642 QPSSSLGLLWHISLTYFQCSSLACLEV 562
           QP+S   L W I  TY + S+ +CL++
Sbjct: 605 QPTSVFDLCWTIKPTYEKSSNFSCLQL 631


>SPBC13G1.09 |||bystin-family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 449

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +1

Query: 349 RSQKQLMDEISNGHEPAIKIEYVNEAEKDSSE-PELTRDSVYEEVE 483
           R QK+ +DE  NG    I     N  +KD+ E P +  +S YEE E
Sbjct: 60  REQKEELDEEENGKPSQISAFISNGHQKDTLENPAI--ESSYEESE 103


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
 Frame = -1

Query: 643 TTIVFSGSPMAYFVNLF-SMFFACLF-----GSFLFVGPVVIIFLSTFSFG*HQQEHLRI 482
           T + F  S  + F +LF  +FF C F      SF+F      +FL + +    Q   L++
Sbjct: 2   TGMFFFASLFSSFESLFFRLFFVCSFFFPLLYSFIFATLHAFVFLFSHTLVSSQFRRLKL 61

Query: 481 PLLHTH 464
           P  H H
Sbjct: 62  PYHHHH 67


>SPBC365.13c |hba1|caf1|Ran GTPase binding protein
           Hba1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 399

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/60 (23%), Positives = 25/60 (41%)
 Frame = +2

Query: 503 MSTKRESRQKNNDHRSNKEKTSKQASEEH*K*VNEICHRRPREDDGCIEKQKILRIDTTN 682
           +STK    +K+N+ +    K     +EE      ++    P ED G  E ++      +N
Sbjct: 13  ISTKNALEEKSNETKDETSKRKHDPAEEESAVSTKVSKSEPLEDKGNAEVKEFKETTKSN 72


>SPBC30B4.08 |eri1||double-strand siRNA
           ribonuclease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
 Frame = +1

Query: 166 WLFKIFM-VRTQMARTYRGLRRNVNQMLRFLWIQLDSEDYNQICDP-CIKRLRESCSFRN 339
           W+   F+ +R+     YR  R N+N ML    +Q +  ++  I D   + R+ +     N
Sbjct: 225 WIKGPFVDIRSFYKDVYRVPRTNINGMLEHWGLQFEGSEHRGIDDARNLSRIVKKMCSEN 284

Query: 340 LVIRSQKQLMDEISNGHEP 396
           +     +  M+   NG  P
Sbjct: 285 VEFECNRWWMEYEKNGWIP 303


>SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 481

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = -3

Query: 185 INILNNHIPNSICI 144
           +N+ N ++PNS+CI
Sbjct: 367 LNVANKYLPNSVCI 380


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 646  DTTIVFSGSPMAYFVNLFSM 587
            D T+V S +P  +FVN+ SM
Sbjct: 2689 DGTVVSSHNPFVFFVNVLSM 2708


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,936,434
Number of Sequences: 5004
Number of extensions: 63819
Number of successful extensions: 198
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)