Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0796
(685 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0372 - 23580742-23580936,23581004-23581051 31 0.64
07_03_0123 - 13688562-13689146,13689233-13689583,13689665-136898... 30 2.0
04_03_0217 - 12769956-12770252,12770340-12770490,12770572-127708... 29 3.4
05_03_0194 + 9547626-9547715,9549235-9549311,9549493-9549564,954... 29 4.5
05_03_0186 + 9365179-9365342,9367332-9367403,9368362-9368433,936... 29 4.5
09_04_0107 - 14640097-14640348,14640472-14640701,14640805-146412... 28 6.0
11_03_0116 - 10220821-10220937,10221414-10221497,10221613-102216... 28 7.9
02_03_0162 + 15834714-15835576,15835696-15836434 28 7.9
02_03_0158 - 15816832-15817570,15817690-15818552 28 7.9
>03_05_0372 - 23580742-23580936,23581004-23581051
Length = 80
Score = 31.5 bits (68), Expect = 0.64
Identities = 14/30 (46%), Positives = 22/30 (73%)
Frame = -3
Query: 203 AICVRTINILNNHIPNSICISRSTFSLQFP 114
AIC+ TI ++N+ P +C+SR++ S QFP
Sbjct: 38 AICLVTIELVND-TPLLLCVSRNSKSFQFP 66
>07_03_0123 -
13688562-13689146,13689233-13689583,13689665-13689861,
13689954-13690072,13690103-13690245,13690332-13690544,
13690649-13690774,13690891-13691028,13691109-13691454,
13691532-13691798,13691939-13691983,13692148-13692349,
13692405-13692507,13692599-13692810,13692891-13693113,
13693211-13693291
Length = 1116
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = +3
Query: 495 SC*CQPKEKVDRKIMTTGPTKRKLPNRQAKNIENRLTKYAIGDPEKTMVVSRSKKS 662
+C C PK K +K TT P K K EN+ YA+G+ E+ + ++K+
Sbjct: 693 TCNCWPKWKSKKK--TTKPKTEKKKRSFFKRAENQSPAYALGEIEEGAPGAENEKA 746
>04_03_0217 -
12769956-12770252,12770340-12770490,12770572-12770803,
12770979-12771040,12771189-12771235,12771313-12771431,
12771513-12771671,12771745-12771925,12772010-12772361,
12772673-12772717,12772789-12772854,12772951-12773016,
12773107-12773178,12773283-12773357,12773437-12773508,
12774169-12774240,12774499-12774570,12776252-12776323,
12776400-12776471,12776811-12776997,12778343-12778457
Length = 861
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +1
Query: 163 IWLFKIFMVRTQMAR--TYRGLRRNVNQMLRFLWIQLDSEDYNQICDPCIKRLRESCSFR 336
++ F + M+ T R T L N +L + W D + +I DP IK + +FR
Sbjct: 732 VFAFGVVMLETVAGRPNTNNSLEENKIYLLEWAWGMYDKDQALEIVDPTIKDFDKDEAFR 791
>05_03_0194 +
9547626-9547715,9549235-9549311,9549493-9549564,
9549648-9549719,9550047-9550118,9550199-9550225,
9550226-9550297,9550382-9550453,9550897-9550968,
9551047-9551121,9551226-9551297,9551384-9551449,
9551544-9551609,9551683-9551727,9551822-9551886,
9551971-9552350,9552419-9552545,9552688-9552846,
9552929-9553047,9553182-9553392,9553582-9553762,
9553845-9553995,9554086-9554448
Length = 901
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = +1
Query: 163 IWLFKIFMVRTQMAR--TYRGLRRNVNQMLRFLWIQLDSEDYNQICDPCIKRLRESCSFR 336
++ F + M+ T R T L + +L + W + ++ DPC+K E +FR
Sbjct: 750 VFAFGVLMLETVAGRSNTNNSLEESKIYLLEWAWGLYEMGQALRVVDPCLKEFDEKEAFR 809
Query: 337 NLVI 348
+ I
Sbjct: 810 VICI 813
>05_03_0186 + 9365179-9365342,9367332-9367403,9368362-9368433,
9368719-9368790,9368889-9368954,9369043-9369114,
9369716-9369790,9370059-9370124,9370360-9370404,
9370713-9371064,9371147-9371393,9371418-9371576,
9371659-9371807,9371878-9372088,9372242-9372473,
9372557-9372707,9373147-9373494
Length = 850
Score = 28.7 bits (61), Expect = 4.5
Identities = 26/112 (23%), Positives = 47/112 (41%), Gaps = 2/112 (1%)
Frame = +1
Query: 163 IWLFKIFMVRTQMAR--TYRGLRRNVNQMLRFLWIQLDSEDYNQICDPCIKRLRESCSFR 336
++ F + M+ T R T L + +L + W Q + E +I DP +K + +FR
Sbjct: 704 VFAFGVVMLETVAGRSNTNNSLEESKINLLEWAWDQYEKEQALRILDPNLKGFNKDEAFR 763
Query: 337 NLVIRSQKQLMDEISNGHEPAIKIEYVNEAEKDSSEPELTRDSVYEEVEFLD 492
VIR + P K+ + E + + +T+ S E + +D
Sbjct: 764 --VIRVALHCTQGSPHQRPPMSKVVAMLTGEVEVPK-VVTKPSYITEWQMMD 812
>09_04_0107 -
14640097-14640348,14640472-14640701,14640805-14641215,
14641481-14643831,14643927-14644093
Length = 1136
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +1
Query: 361 QLMDEISNGHEPAIKIEYVNEAEKDSSEPELTRDSVYEEVEFLDV 495
Q+++E +PAI +E E E+D+ E E+ + EE + +V
Sbjct: 164 QVLEEHEPEKKPAIAMESKQERERDAEEREVVMEEEEEEEQSREV 208
>11_03_0116 -
10220821-10220937,10221414-10221497,10221613-10221687,
10223267-10223318,10223367-10223413,10226277-10226333,
10226829-10226927,10229462-10229581,10229666-10229788,
10229988-10230104
Length = 296
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +1
Query: 298 PCIKRLRESCSFRNLVIRSQKQLMDEISNGHEPAIKIEYVN 420
P ++ + S SFRN+++ QL+ E++ G P +YV+
Sbjct: 169 PWVEFINPSESFRNIIVDYPFQLITELTRGVPPINMQKYVD 209
>02_03_0162 + 15834714-15835576,15835696-15836434
Length = 533
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/60 (28%), Positives = 33/60 (55%)
Frame = +1
Query: 316 RESCSFRNLVIRSQKQLMDEISNGHEPAIKIEYVNEAEKDSSEPELTRDSVYEEVEFLDV 495
R F N + ++++MD + ++ I+++ EAEK+ ELT ++V VE ++V
Sbjct: 274 RRLAFFNNNYVEKRRKVMDTPGDRNKLRCAIDHILEAEKNG---ELTAENVIYIVENINV 330
>02_03_0158 - 15816832-15817570,15817690-15818552
Length = 533
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/60 (28%), Positives = 33/60 (55%)
Frame = +1
Query: 316 RESCSFRNLVIRSQKQLMDEISNGHEPAIKIEYVNEAEKDSSEPELTRDSVYEEVEFLDV 495
R F N + ++++MD + ++ I+++ EAEK+ ELT ++V VE ++V
Sbjct: 274 RRLAFFNNNYVEKRRKVMDTPGDRNKLRCAIDHILEAEKNG---ELTAENVIYIVENINV 330
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,571,345
Number of Sequences: 37544
Number of extensions: 352439
Number of successful extensions: 855
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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