Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0796
         (685 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19464| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_35985| Best HMM Match : Sushi (HMM E-Value=2.4)                     29   3.5  
SB_26441| Best HMM Match : TNFR_c6 (HMM E-Value=3.8)                   29   4.6  
SB_30671| Best HMM Match : rve (HMM E-Value=6.2e-32)                   28   6.1  
SB_37297| Best HMM Match : SCAN (HMM E-Value=4.4)                      28   8.1  

>SB_19464| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1653

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +2

Query: 515 RESRQKNNDHRSNKEKTSKQASEEH*K*VNEICHRRPREDD 637
           RE R++    R ++E+  K+  ++  +   E   RRPREDD
Sbjct: 827 REDRERERREREDRERREKEEFDKRDRERREKDDRRPREDD 867


>SB_35985| Best HMM Match : Sushi (HMM E-Value=2.4)
          Length = 391

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = -2

Query: 615 WHISLTYFQCSSLACLE---VFSLLDRWSLFFCLLSLLV 508
           W +     + S   C++   VF+ +DRWS+F C+  LLV
Sbjct: 87  WSLFTCVDRWSVFTCVDRWSVFTCVDRWSVFTCIDHLLV 125



 Score = 28.3 bits (60), Expect = 6.1
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 573 CLEVFSLLDRWSLFFCL 523
           C  VF  +DRWSLF C+
Sbjct: 77  CYSVFICVDRWSLFTCV 93


>SB_26441| Best HMM Match : TNFR_c6 (HMM E-Value=3.8)
          Length = 281

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = +3

Query: 480 GILRCSC*CQPKEKVDRKIMTTGPTKRKLPNRQAKNIENRLTKYAIGDPEK 632
           G+L CS       K+    +     K+K P RQ+ N  N L K+     EK
Sbjct: 13  GLLDCSSMSMGMRKMLEPTLDLRRFKQKKPLRQSNNFNNNLDKFIASTKEK 63


>SB_30671| Best HMM Match : rve (HMM E-Value=6.2e-32)
          Length = 965

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 17/55 (30%), Positives = 30/55 (54%)
 Frame = +1

Query: 196 QMARTYRGLRRNVNQMLRFLWIQLDSEDYNQICDPCIKRLRESCSFRNLVIRSQK 360
           +M R   GL+R +N     L  +L+ +D+N+  +  +KRL+      NL +R +K
Sbjct: 267 EMNRILSGLQRVLNNRDDILIGELNEDDHNKNVEAVLKRLKA----HNLTLRREK 317


>SB_37297| Best HMM Match : SCAN (HMM E-Value=4.4)
          Length = 182

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
 Frame = +1

Query: 244 LRFLWI--QLDSEDYNQICDPCIKR-----LRESCSFRNLVIRSQKQLMDEISNGHEPAI 402
           L+ LW+  Q+  E Y + C   +KR     LRE C   NL+ RSQ    +  S+  E A+
Sbjct: 42  LKRLWLKTQIHREMYVEQCVRALKRVAAVRLREHCDNNNLLERSQSAYRE--SHSTETAL 99

Query: 403 K 405
           K
Sbjct: 100 K 100


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,928,407
Number of Sequences: 59808
Number of extensions: 430382
Number of successful extensions: 1415
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1406
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)