Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0796
         (685 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75527-4|CAA99779.2|  316|Caenorhabditis elegans Hypothetical pr...    35   0.047
DQ178236-1|ABA18178.1|  316|Caenorhabditis elegans putative low ...    35   0.047
Z35663-11|CAA84732.2|  791|Caenorhabditis elegans Hypothetical p...    29   2.3  
AC006792-1|AAF60741.2|  642|Caenorhabditis elegans Hypothetical ...    29   4.1  
Z92813-5|CAB07285.1|  425|Caenorhabditis elegans Hypothetical pr...    28   7.1  
Z81489-1|CAB04005.2|  266|Caenorhabditis elegans Hypothetical pr...    28   7.1  
Z68337-2|CAA92746.2|  516|Caenorhabditis elegans Hypothetical pr...    28   7.1  
AL132904-10|CAC35843.2| 1481|Caenorhabditis elegans Hypothetical...    28   7.1  
AF024503-4|AAG24097.1|  330|Caenorhabditis elegans Serpentine re...    28   7.1  
Z79753-6|CAI91165.1|  218|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>Z75527-4|CAA99779.2|  316|Caenorhabditis elegans Hypothetical
           protein C15C8.4 protein.
          Length = 316

 Score = 35.1 bits (77), Expect = 0.047
 Identities = 28/112 (25%), Positives = 52/112 (46%), Gaps = 5/112 (4%)
 Frame = +1

Query: 214 RGLRRNVNQMLRFLWIQLDSEDYNQICDPCIKRL-RESCSFRNLVIRSQKQLMDEISNGH 390
           +   R +N  L  +  ++ SE+++   +P +KRL + +     L       L DE+S+  
Sbjct: 193 KAANRELNDHLDEVHRKVTSEEFSPFNEPRVKRLWKLAQENEKLTPHELSVLKDELSHFE 252

Query: 391 EPAIKIEY----VNEAEKDSSEPELTRDSVYEEVEFLDVPVDVNQKRK*TEK 534
               KIE+    V+  ++D+ E    +  VYE +E       +N+K +  EK
Sbjct: 253 SQLKKIEFHKEEVSRLQEDAEERGKDKSQVYENLELSIKHEKLNRKARKLEK 304


>DQ178236-1|ABA18178.1|  316|Caenorhabditis elegans putative low
           density lipoproteinreceptor associated protein (37.4 kD)
           protein.
          Length = 316

 Score = 35.1 bits (77), Expect = 0.047
 Identities = 28/112 (25%), Positives = 52/112 (46%), Gaps = 5/112 (4%)
 Frame = +1

Query: 214 RGLRRNVNQMLRFLWIQLDSEDYNQICDPCIKRL-RESCSFRNLVIRSQKQLMDEISNGH 390
           +   R +N  L  +  ++ SE+++   +P +KRL + +     L       L DE+S+  
Sbjct: 193 KAANRELNDHLDEVHRKVTSEEFSPFNEPRVKRLWKLAQENEKLTPHELSVLKDELSHFE 252

Query: 391 EPAIKIEY----VNEAEKDSSEPELTRDSVYEEVEFLDVPVDVNQKRK*TEK 534
               KIE+    V+  ++D+ E    +  VYE +E       +N+K +  EK
Sbjct: 253 SQLKKIEFHKEEVSRLQEDAEERGKDKSQVYENLELSIKHEKLNRKARKLEK 304


>Z35663-11|CAA84732.2|  791|Caenorhabditis elegans Hypothetical
           protein T04A8.13 protein.
          Length = 791

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +2

Query: 512 KRESRQKNNDHRSNKEKTSKQASEEH*K*VNEICHRRPREDD 637
           K+E +++  D +  KEKT     +E  K   E     P++DD
Sbjct: 141 KKEKKEEKKDEKEKKEKTEDDKEKEKEKTKEEKVKEDPKKDD 182


>AC006792-1|AAF60741.2|  642|Caenorhabditis elegans Hypothetical
           protein Y50C1A.1 protein.
          Length = 642

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +1

Query: 295 DPCIKRLRESCSFRNLVIRSQKQLMDEISNGHEPAIKIEY-VNEAEKDSSEPELTR 459
           D CI R+  +C   + ++ +  Q MD+I N +  + K  +  N+  +  S   ++R
Sbjct: 471 DDCIARMNSTCVLASELLPTHHQYMDKIINEYMKSAKQRFQQNQRTQSDSRKRISR 526


>Z92813-5|CAB07285.1|  425|Caenorhabditis elegans Hypothetical
           protein T28A8.5 protein.
          Length = 425

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
 Frame = -1

Query: 628 SGSPMAYFVNLFSMFFA--CLFGSFLFVGPV--VIIFLSTFSFG*HQQEHLRIPLLHTHY 461
           S  P      L  +FF   CLF  F     V  +II +ST S    Q +  RIPL H  Y
Sbjct: 241 SSRPALLHFTLILIFFGFICLFSPFFHFSVVFSLIIVISTISC--EQSKRQRIPLSHWWY 298


>Z81489-1|CAB04005.2|  266|Caenorhabditis elegans Hypothetical
           protein C55A1.1 protein.
          Length = 266

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = -3

Query: 248 RSIWLTFRRKPLYVLAICVRTINILNNHIPNSICISRSTFSLQFPFFYI 102
           RSI L   +K L+V  +   T+ ++  HIP ++  +   F++ F  F +
Sbjct: 197 RSIRLRHLQKQLFVALVFQATVPLILMHIPVTVLYTCCVFNIVFDTFSV 245


>Z68337-2|CAA92746.2|  516|Caenorhabditis elegans Hypothetical
           protein M7.2 protein.
          Length = 516

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +1

Query: 343 VIRSQKQLMDEISNGHEPAIKIEYVNEAEKDSSEPELTRDSV 468
           V+++ +Q +  + + HE A +I   N    DSSEP L  + +
Sbjct: 12  VLKTVQQTLFALRDEHEAATRILEANLINSDSSEPSLPSEKM 53


>AL132904-10|CAC35843.2| 1481|Caenorhabditis elegans Hypothetical
            protein Y111B2A.14 protein.
          Length = 1481

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 10/42 (23%), Positives = 22/42 (52%)
 Frame = +2

Query: 512  KRESRQKNNDHRSNKEKTSKQASEEH*K*VNEICHRRPREDD 637
            + +  Q+  + +  KE+  ++  E   + + EI  R+ RE+D
Sbjct: 997  RMKKEQEKQEEKERKEREKREEKERKEREIREIMERKKREED 1038


>AF024503-4|AAG24097.1|  330|Caenorhabditis elegans Serpentine
           receptor, class h protein245 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -3

Query: 146 ISRSTFSLQFPFFYIIKLQFALCEQLLINPDI 51
           ISR TF  Q  FF  I +QF     ++I+P I
Sbjct: 226 ISRKTFEAQQTFFKAITIQFVFFLLMMISPII 257


>Z79753-6|CAI91165.1|  218|Caenorhabditis elegans Hypothetical
           protein F20G2.6b protein.
          Length = 218

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +2

Query: 491 MFLLMSTKRESRQKNNDHRSNKEKTSKQASEEH*K*VNEICHRRPREDD 637
           MF   +      +KNN ++ NK +TS +      + V  +CHR    DD
Sbjct: 1   MFFFQNASNSILEKNNANK-NKLRTSSEERNYADRSVVRVCHREVLGDD 48


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,059,473
Number of Sequences: 27780
Number of extensions: 352132
Number of successful extensions: 1281
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1281
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)