Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0789
         (446 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...    85   6e-18
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...    85   6e-18
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    26   2.3  
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom...    26   2.3  
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos...    26   3.0  
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    25   5.3  
SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein Vps33|S...    25   7.0  
SPAPB2B4.06 |||conserved fungal protein|Schizosaccharomyces pomb...    24   9.3  

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 84.6 bits (200), Expect = 6e-18
 Identities = 36/42 (85%), Positives = 38/42 (90%)
 Frame = +1

Query: 259 ESWGTGRAVARIPRVRGGGTHRSSQGAFGNMCRGGRMYAPTK 384
           ESWGTGRA+ARIPRV GGGTHRS Q AFGNMCR GRM+APTK
Sbjct: 65  ESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTK 106



 Score = 72.5 bits (170), Expect = 3e-14
 Identities = 34/63 (53%), Positives = 44/63 (69%)
 Frame = +2

Query: 65  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRMDLVNDVHVSMSKNSRQPYCVTSEAG 244
           ++ ARP VS+Y+ K  +V      LPFVFKAPIR DLV  VH +++KN RQPY V+ +AG
Sbjct: 1   MAAARPTVSIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59

Query: 245 QQT 253
            QT
Sbjct: 60  HQT 62


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 84.6 bits (200), Expect = 6e-18
 Identities = 36/42 (85%), Positives = 38/42 (90%)
 Frame = +1

Query: 259 ESWGTGRAVARIPRVRGGGTHRSSQGAFGNMCRGGRMYAPTK 384
           ESWGTGRA+ARIPRV GGGTHRS Q AFGNMCR GRM+APTK
Sbjct: 65  ESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTK 106



 Score = 73.3 bits (172), Expect = 2e-14
 Identities = 35/63 (55%), Positives = 44/63 (69%)
 Frame = +2

Query: 65  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRMDLVNDVHVSMSKNSRQPYCVTSEAG 244
           ++ ARP VS+YS K  +V      LPFVFKAPIR DLV  VH +++KN RQPY V+ +AG
Sbjct: 1   MAAARPTVSIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59

Query: 245 QQT 253
            QT
Sbjct: 60  HQT 62


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 126 APCTVSLFSEYTDTKGRATDRLISLL 49
           A C V ++SEYT   G ++  L++L+
Sbjct: 490 ADCVVKIWSEYTKNTGESSPVLVALV 515


>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 355

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +1

Query: 139 PVRIQGAHTYGPGQ*CSRFYVQELEAALLRDQ 234
           PV +QG HT G      +F  Q L A +L  Q
Sbjct: 29  PVDVQGCHTLGERNDPKKFRFQTLVALMLSSQ 60


>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
           Pof11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 506

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -2

Query: 355 DTCYRRHLDWTYGYHHHGHAEFGQQHVRY 269
           D+  R  L+W+Y Y  H H +   +H R+
Sbjct: 171 DSNGRPLLNWSYLYKEHAHLDSNWRHGRF 199


>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 25.0 bits (52), Expect = 5.3
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 64  SIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTYGP 174
           SI SP+ SVG   +  D +  S + P+ I G  +  P
Sbjct: 312 SITSPSSSVGQIPQPTDHSALSPSKPMSISGTESPNP 348


>SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein
           Vps33|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 346 YRRHLDWTYGYHH 308
           YRR +  TYGY+H
Sbjct: 411 YRREITQTYGYYH 423


>SPAPB2B4.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 245

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -2

Query: 373 RTYVHHDTCYRRHLDWTYGYHHHGH 299
           + Y +H    R HL+WT G     H
Sbjct: 190 KAYTNHFYILRSHLEWTKGRKAQTH 214


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,729,913
Number of Sequences: 5004
Number of extensions: 32580
Number of successful extensions: 95
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)