Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0789
(446 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0) 93 7e-20
SB_16362| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.14
SB_5942| Best HMM Match : Sec7 (HMM E-Value=3.1e-09) 31 0.57
SB_37258| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.76
SB_15121| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.76
SB_25421| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.0
SB_34804| Best HMM Match : rve (HMM E-Value=1.2e-24) 29 2.3
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5) 29 2.3
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.1
SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2) 28 3.1
SB_59326| Best HMM Match : FtsX (HMM E-Value=2.2) 28 3.1
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45) 28 4.0
SB_50961| Best HMM Match : Trypsin (HMM E-Value=0) 27 5.3
SB_20017| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.3
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0) 27 5.3
SB_3342| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.3
SB_50530| Best HMM Match : Pencillinase_R (HMM E-Value=3.3) 27 5.3
SB_42989| Best HMM Match : HdeA (HMM E-Value=9.6) 27 9.3
SB_32117| Best HMM Match : DUF1143 (HMM E-Value=7.7) 27 9.3
SB_4658| Best HMM Match : HTH_psq (HMM E-Value=0) 27 9.3
SB_14341| Best HMM Match : DUF1339 (HMM E-Value=4.4) 27 9.3
>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
Length = 299
Score = 93.5 bits (222), Expect = 7e-20
Identities = 40/42 (95%), Positives = 41/42 (97%)
Frame = +1
Query: 259 ESWGTGRAVARIPRVRGGGTHRSSQGAFGNMCRGGRMYAPTK 384
ESWGTGRAVARIPRVRGGGTHRS QGAFGNMCRGGRM+APTK
Sbjct: 62 ESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK 103
Score = 65.3 bits (152), Expect = 2e-11
Identities = 32/60 (53%), Positives = 41/60 (68%)
Frame = +2
Query: 74 ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRMDLVNDVHVSMSKNSRQPYCVTSEAGQQT 253
ARP+++V++E E+ LP VFKAPIR DLVN VH +++KN RQPY V AG QT
Sbjct: 2 ARPVITVFNENGESA--GQTTLPAVFKAPIRPDLVNFVHSNIAKNKRQPYAVNKLAGHQT 59
>SB_16362| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 329
Score = 32.7 bits (71), Expect = 0.14
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
Frame = -2
Query: 376 GRTYVHHDTCYRRHLD-WTYGYHHHGHAEFGQQHVRYPMIRXGLLTSLTG-----HAVGL 215
G Y HH+ C+ + + YG H H Q +++ +R L G H +GL
Sbjct: 75 GVHYGHHEGCWNPLMKPYLYGTREHFHIIDLNQTIKHFRVRLWYFVYLYGNREHFHIIGL 134
Query: 214 PRVLGHRNVNIIDQVHTYGRLEY 146
+ + H V + V+ YG E+
Sbjct: 135 NQTIKHFRVRLWYFVYLYGNREH 157
>SB_5942| Best HMM Match : Sec7 (HMM E-Value=3.1e-09)
Length = 304
Score = 30.7 bits (66), Expect = 0.57
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = -2
Query: 367 YVHHDTCYRRHLDWTYGYHHHGH 299
Y HH + H W + +HHH H
Sbjct: 158 YYHHHLLHHHHHHWHHHHHHHRH 180
>SB_37258| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 183
Score = 30.3 bits (65), Expect = 0.76
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = -2
Query: 319 GYHHHGHAEFGQQHVRYPMIRXGLLTSLTGH 227
G H A G + VRYP IR G LTS G+
Sbjct: 105 GIHQIVRALIGYREVRYPTIRTGPLTSKAGN 135
>SB_15121| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 378
Score = 30.3 bits (65), Expect = 0.76
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -2
Query: 427 SAVGG*RDVASAARVSWGRTYVHHDTCYRRHLDWTYGYHHHGH 299
S+ G D+ SA + G ++H TC+ H+ +HHH H
Sbjct: 21 SSSSGPGDIQSAMTIVSGTLCINHVTCHHHHI-----HHHHRH 58
>SB_25421| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 501
Score = 29.9 bits (64), Expect = 1.0
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -1
Query: 320 WVPPPRTRGIRATARPVPHD 261
W+PP RTR R T PV H+
Sbjct: 228 WMPPVRTRPARPTVMPVTHE 247
>SB_34804| Best HMM Match : rve (HMM E-Value=1.2e-24)
Length = 1725
Score = 28.7 bits (61), Expect = 2.3
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +2
Query: 140 PFVFKAPIRMDLVNDVHVSMSKNSRQ--PYCVTSEAGQQTXPNHGVPDVLLP 289
PF F P+R++L+N++H+ ++ ++ + P+ G Q N GV +P
Sbjct: 1264 PFYF--PLRLELINEIHLYITDDTGRTIPFLSGGFEGSQQVANPGVGLFTMP 1313
>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
Length = 612
Score = 28.7 bits (61), Expect = 2.3
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -2
Query: 367 YVHHDTCYRRHLDWTYGYHHHGH 299
Y HH CY RH + + Y HH H
Sbjct: 25 YCHHRYCYYRHHHYCW-YRHHYH 46
Score = 28.3 bits (60), Expect = 3.1
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = -2
Query: 373 RTYVHHDTCYRRHLDWTYGYHHHGHAEFGQQHVRYPMIR 257
R Y HH C H + Y Y HH H + + H YP R
Sbjct: 15 RCYRHHHYCCYCHHRYCY-YRHH-HYCWYRHHYHYPCYR 51
>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3486
Score = 28.3 bits (60), Expect = 3.1
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -3
Query: 141 GRGLAAPCTVSLFSEYTDTKGRATDRLI 58
G+GL C+V+L S Y T+G+ RL+
Sbjct: 3163 GKGLTTWCSVNLDSVYLSTEGKEVYRLV 3190
>SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)
Length = 694
Score = 28.3 bits (60), Expect = 3.1
Identities = 11/43 (25%), Positives = 18/43 (41%)
Frame = -2
Query: 397 SAARVSWGRTYVHHDTCYRRHLDWTYGYHHHGHAEFGQQHVRY 269
S + V + R + HH + H + +HHH H H +
Sbjct: 201 SPSIVIYRRHHQHHQHHHHHHHQHNHHHHHHNHHHHHHHHYHH 243
>SB_59326| Best HMM Match : FtsX (HMM E-Value=2.2)
Length = 238
Score = 28.3 bits (60), Expect = 3.1
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -2
Query: 367 YVHHDTCYRRHLDWTYGYHH 308
+ HH Y HLD+ + YHH
Sbjct: 100 HYHHHHHYHHHLDYDHHYHH 119
>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
Length = 453
Score = 27.9 bits (59), Expect = 4.0
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -2
Query: 361 HHDTCYRRHLDWTYGYHHHGHAEFGQQHVRY 269
HH +R + +HHH H E+ ++H RY
Sbjct: 324 HHHQRHRHRHRHRHRHHHHHHHEYNRRH-RY 353
>SB_50961| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 1007
Score = 27.5 bits (58), Expect = 5.3
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +3
Query: 192 FLCPRTRGSPTA*PVRLVNKPXRIMGYRTC 281
+LC +T G+ RL N P I G RTC
Sbjct: 220 YLCSKTCGNGVRTRYRLCNNPVPINGGRTC 249
>SB_20017| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 386
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -2
Query: 331 DWTYGYHHHGHAEFGQQHVRYPMIRXGLLT 242
DW+ H HG A Q HV Y G+L+
Sbjct: 120 DWSSDLHLHGDASTRQVHVEYDCEVSGILS 149
>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
Length = 1467
Score = 27.5 bits (58), Expect = 5.3
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 362 PPRHMLPKAP*LDLWVPPPRTRGIRATARP 273
PP ++P P L L +PPP R +AT P
Sbjct: 648 PPLLLIPLLPLLTLPLPPPTVRHPQATPLP 677
>SB_3342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 919
Score = 27.5 bits (58), Expect = 5.3
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = -2
Query: 370 TYVHHDTCYRRHLDWTYGYHHHGHAEFGQQHVRYPMIRXGLLTSLTGHAVGLPRVLGHR 194
+Y HH R HL+ YHHH H + H + +I L+ S+ A+ + ++ +R
Sbjct: 261 SYYHHHHHRRHHLN---HYHHHYHLD---DHFIFIIIITTLIVSIISVAITVHILIPYR 313
>SB_50530| Best HMM Match : Pencillinase_R (HMM E-Value=3.3)
Length = 356
Score = 27.5 bits (58), Expect = 5.3
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -2
Query: 367 YVHHDTCYRRHLDWTYGYHHH 305
Y H+D Y H + Y YH+H
Sbjct: 299 YYHYDYYYHYHYYYYYDYHYH 319
Score = 27.1 bits (57), Expect = 7.1
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -2
Query: 367 YVHHDTCYRRHLDWTYGYHHHGHAEF 290
+ H+D Y H D+ Y Y +H H ++
Sbjct: 323 HYHYDYHYDYHYDYHYHYDYHYHYDY 348
>SB_42989| Best HMM Match : HdeA (HMM E-Value=9.6)
Length = 235
Score = 26.6 bits (56), Expect = 9.3
Identities = 19/52 (36%), Positives = 24/52 (46%)
Frame = +1
Query: 199 VQELEAALLRDQ*GWSTNHXESWGTGRAVARIPRVRGGGTHRSSQGAFGNMC 354
V EL A + RDQ G T E+ R IP+ R GT R+ Q +C
Sbjct: 141 VSELLAQVSRDQAGTGTYSVEALENKRVAVDIPK-RLTGTARAQQEVAPALC 191
>SB_32117| Best HMM Match : DUF1143 (HMM E-Value=7.7)
Length = 755
Score = 26.6 bits (56), Expect = 9.3
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Frame = +2
Query: 83 LVSVYSEKSETVQGAAKPLPFV----FKAPIRMDLVNDVHVSMSKNSRQPYCVTSEAGQQ 250
LV + SE+ ++ A P+ +V K DL+N V +M + P + +
Sbjct: 376 LVILISEERRCIKPYALPVWYVPYKSIKDQFLRDLLNKVKSAMVELGMIPVVDAAGRPKV 435
Query: 251 TXPNHGVPDVLLPE 292
+ PN +PD L+ E
Sbjct: 436 SQPNRHIPDSLITE 449
>SB_4658| Best HMM Match : HTH_psq (HMM E-Value=0)
Length = 1595
Score = 26.6 bits (56), Expect = 9.3
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -2
Query: 403 VASAARVSWGRTYVHHD 353
VA RV WGR HHD
Sbjct: 1157 VAPCTRVKWGRENYHHD 1173
>SB_14341| Best HMM Match : DUF1339 (HMM E-Value=4.4)
Length = 801
Score = 26.6 bits (56), Expect = 9.3
Identities = 15/28 (53%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +1
Query: 265 WGTGRAVARIPRVRGGGTHRS-SQGAFG 345
W T R VA RVR G R SQGA G
Sbjct: 270 WATARVVAGRKRVRATGPRRGWSQGARG 297
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,694,548
Number of Sequences: 59808
Number of extensions: 287870
Number of successful extensions: 772
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 883875528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -