Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0789
(446 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal pro... 89 1e-18
U42439-8|AAM98032.1| 431|Caenorhabditis elegans Hypothetical pr... 30 0.88
AL132949-31|CAB61110.3| 297|Caenorhabditis elegans Hypothetical... 28 2.7
Z81573-1|CAB04625.3| 909|Caenorhabditis elegans Hypothetical pr... 27 4.7
U58748-10|AAB52970.2| 701|Caenorhabditis elegans Hypothetical p... 27 6.2
Z92831-7|CAB07369.2| 2396|Caenorhabditis elegans Hypothetical pr... 27 8.2
Z81066-8|CAB02974.2| 2396|Caenorhabditis elegans Hypothetical pr... 27 8.2
Z70718-11|CAA94680.1| 590|Caenorhabditis elegans Hypothetical p... 27 8.2
Z68301-10|CAA92629.1| 590|Caenorhabditis elegans Hypothetical p... 27 8.2
>AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 4 protein.
Length = 345
Score = 89.0 bits (211), Expect = 1e-18
Identities = 38/42 (90%), Positives = 39/42 (92%)
Frame = +1
Query: 259 ESWGTGRAVARIPRVRGGGTHRSSQGAFGNMCRGGRMYAPTK 384
ESWGTGRAVARIPRVRGGGTHRS QGAFGNMCRGG M+AP K
Sbjct: 64 ESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLK 105
Score = 55.6 bits (128), Expect = 2e-08
Identities = 28/59 (47%), Positives = 39/59 (66%)
Frame = +2
Query: 74 ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRMDLVNDVHVSMSKNSRQPYCVTSEAGQQ 250
ARPLV+VY EK E Q + LP VF+ PIR DLV+ + + +N RQ + V ++AG+Q
Sbjct: 3 ARPLVTVYDEKYEATQSQIR-LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQ 60
>U42439-8|AAM98032.1| 431|Caenorhabditis elegans Hypothetical
protein F19C7.8a protein.
Length = 431
Score = 29.9 bits (64), Expect = 0.88
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -2
Query: 340 RHLDWTYGYHHHGHAEFGQQHVRYPMIR 257
R L +T+GYHH+ HA Q + + R
Sbjct: 62 RELPFTHGYHHNPHARLSQPDIHSAIYR 89
>AL132949-31|CAB61110.3| 297|Caenorhabditis elegans Hypothetical
protein Y53F4B.36 protein.
Length = 297
Score = 28.3 bits (60), Expect = 2.7
Identities = 13/59 (22%), Positives = 25/59 (42%)
Frame = +2
Query: 59 MSLSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRMDLVNDVHVSMSKNSRQPYCVTS 235
MS++V P +S V + + F++ P ++ D H+ + + CV S
Sbjct: 182 MSMAVTSPYLSKLDRLPIVVSACKRAMCFIYDRPTNSIILLDTHMHFKRRAVSVLCVAS 240
>Z81573-1|CAB04625.3| 909|Caenorhabditis elegans Hypothetical
protein M02G9.1 protein.
Length = 909
Score = 27.5 bits (58), Expect = 4.7
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -1
Query: 122 PAPSHSSLNTPTLKVGLPIDSFRYFSEAIPPKYT 21
P S +S N PT+K+ L I+ YF PK T
Sbjct: 184 PTTSSTSTNAPTIKITLNIND-AYFDSNCAPKCT 216
>U58748-10|AAB52970.2| 701|Caenorhabditis elegans Hypothetical
protein ZK180.6 protein.
Length = 701
Score = 27.1 bits (57), Expect = 6.2
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 292 IPRVRGGGTHRSSQGAFGNMCRGG 363
+P GGG S+Q A GN C GG
Sbjct: 26 LPGAGGGGCCSSAQPACGNPCGGG 49
>Z92831-7|CAB07369.2| 2396|Caenorhabditis elegans Hypothetical protein
F22G12.5 protein.
Length = 2396
Score = 26.6 bits (56), Expect = 8.2
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Frame = -2
Query: 343 RRHLDWTYGYHHHGHAEFGQQHVRYPMIRXGLLTSLTGHAVGL----PRVLGHRNVNI 182
+RHL + +G FG +H + R LTSL A+ + R +GH V I
Sbjct: 2070 KRHLGAYFRVRFNGERHFGSEHNTDWIYREAGLTSLAAFALEIKEKCQRQVGHDRVQI 2127
>Z81066-8|CAB02974.2| 2396|Caenorhabditis elegans Hypothetical protein
F22G12.5 protein.
Length = 2396
Score = 26.6 bits (56), Expect = 8.2
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Frame = -2
Query: 343 RRHLDWTYGYHHHGHAEFGQQHVRYPMIRXGLLTSLTGHAVGL----PRVLGHRNVNI 182
+RHL + +G FG +H + R LTSL A+ + R +GH V I
Sbjct: 2070 KRHLGAYFRVRFNGERHFGSEHNTDWIYREAGLTSLAAFALEIKEKCQRQVGHDRVQI 2127
>Z70718-11|CAA94680.1| 590|Caenorhabditis elegans Hypothetical
protein W01B6.9 protein.
Length = 590
Score = 26.6 bits (56), Expect = 8.2
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = -3
Query: 165 RMGALNTNGRGLAAPCTVSLFSEYT-DTKGRATDRLISL 52
+ G LN NGR A F++YT T R TD SL
Sbjct: 7 KTGGLNLNGRASIAITPTKRFTDYTGSTSVRKTDARPSL 45
>Z68301-10|CAA92629.1| 590|Caenorhabditis elegans Hypothetical
protein W01B6.9 protein.
Length = 590
Score = 26.6 bits (56), Expect = 8.2
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = -3
Query: 165 RMGALNTNGRGLAAPCTVSLFSEYT-DTKGRATDRLISL 52
+ G LN NGR A F++YT T R TD SL
Sbjct: 7 KTGGLNLNGRASIAITPTKRFTDYTGSTSVRKTDARPSL 45
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,858,244
Number of Sequences: 27780
Number of extensions: 201901
Number of successful extensions: 542
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 777938954
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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