Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0789
         (446 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   2.0  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   3.5  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   6.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   6.1  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -2

Query: 316 YHHHGHAEFGQQHVRY 269
           +HHH H     QH+ Y
Sbjct: 351 HHHHHHQTQSLQHLHY 366



 Score = 20.6 bits (41), Expect = 8.1
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 322 YGYHHHGHAEFGQ 284
           YG H  GHA+ G+
Sbjct: 210 YGRHLPGHAQMGR 222


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 6/16 (37%), Positives = 7/16 (43%)
 Frame = +3

Query: 267 GYRTCCCPNSACPWWW 314
           G+    C N    WWW
Sbjct: 353 GFLQPVCQNEMNKWWW 368


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 8/22 (36%), Positives = 9/22 (40%)
 Frame = +2

Query: 215 QPYCVTSEAGQQTXPNHGVPDV 280
           QP  V  +      P HG P V
Sbjct: 259 QPVTVNRQLNSDVQPGHGSPPV 280


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 3/35 (8%)
 Frame = -2

Query: 373 RTYVHHDTC---YRRHLDWTYGYHHHGHAEFGQQH 278
           R +   D C   Y R  +W Y +     +EF   H
Sbjct: 712 RLHYETDPCVRYYPRRKEWLYLHRARSESEFEMYH 746


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,262
Number of Sequences: 438
Number of extensions: 2511
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11697255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)