SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0789
         (446 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S...    86   1e-17
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str...    86   1e-17
At2g35640.1 68415.m04371 hydroxyproline-rich glycoprotein family...    31   0.27 
At5g17650.1 68418.m02069 glycine/proline-rich protein glycine/pr...    30   0.82 
At5g06730.1 68418.m00761 peroxidase, putative similar to peroxid...    28   2.5  
At5g05340.1 68418.m00575 peroxidase, putative similar to peroxid...    27   4.4  
At1g03050.1 68414.m00277 epsin N-terminal homology (ENTH) domain...    27   5.8  
At4g08960.1 68417.m01476 phosphotyrosyl phosphatase activator (P...    27   7.6  
At3g12430.1 68416.m01548 expressed protein ; expression supporte...    27   7.6  

>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
           roibosomal protein L4, Arabidopsis thaliana,
           EMBL:CAA79104
          Length = 407

 Score = 85.8 bits (203), Expect = 1e-17
 Identities = 36/42 (85%), Positives = 39/42 (92%)
 Frame = +1

Query: 259 ESWGTGRAVARIPRVRGGGTHRSSQGAFGNMCRGGRMYAPTK 384
           ESWGTGRAV+RIPRV GGGTHR+ Q AFGNMCRGGRM+APTK
Sbjct: 71  ESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTK 112



 Score = 59.7 bits (138), Expect = 9e-10
 Identities = 31/64 (48%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
 Frame = +2

Query: 68  SVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRMDLVNDVHVSMSKNSRQPYCVTSEA 241
           + ARPLV+V     +  T Q     LP V  AP+R D+VN VH  +S NSRQPY V+ +A
Sbjct: 5   AAARPLVTVQGLDGDMSTDQSTTVTLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKA 64

Query: 242 GQQT 253
           G QT
Sbjct: 65  GHQT 68


>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
           similarity to 60S ribosomal protein L1 GB:P49691
          Length = 406

 Score = 85.8 bits (203), Expect = 1e-17
 Identities = 36/42 (85%), Positives = 39/42 (92%)
 Frame = +1

Query: 259 ESWGTGRAVARIPRVRGGGTHRSSQGAFGNMCRGGRMYAPTK 384
           ESWGTGRAV+RIPRV GGGTHR+ Q AFGNMCRGGRM+APTK
Sbjct: 70  ESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTK 111



 Score = 61.7 bits (143), Expect = 2e-10
 Identities = 31/67 (46%), Positives = 43/67 (64%), Gaps = 2/67 (2%)
 Frame = +2

Query: 59  MSLSVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRMDLVNDVHVSMSKNSRQPYCVT 232
           M+ + ARPLV++ +   +  T Q +   LP V  AP+R D+VN VH  +S NSRQPY V+
Sbjct: 1   MAAAAARPLVTIQTLDGDMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVS 60

Query: 233 SEAGQQT 253
            +AG QT
Sbjct: 61  KKAGHQT 67


>At2g35640.1 68415.m04371 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 340

 Score = 31.5 bits (68), Expect = 0.27
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = -1

Query: 386 GFVGAYIRPPRHMLPKAP*LDLWVPPPRTRGIRATARPVPHDSXWFVDQP 237
           GFV   +  P H +P    L L  PPP++  +   + P P  S  F  +P
Sbjct: 174 GFVAPMMAQPMHQIPTTIVLSLPPPPPQSLSLSLPSPPQPPPSSSFHAEP 223


>At5g17650.1 68418.m02069 glycine/proline-rich protein
           glycine/proline-rich protein GPRP - Arabidopsis
           thaliana, EMBL:X84315
          Length = 173

 Score = 29.9 bits (64), Expect = 0.82
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -2

Query: 361 HHDTCYRRHLDWTYGYHHHGHAEF 290
           HH   Y  H    YGY +HGH +F
Sbjct: 122 HHHGHYGHHHGHGYGYGYHGHGKF 145


>At5g06730.1 68418.m00761 peroxidase, putative similar to peroxidase
           [Arabidopsis thaliana] gi|1491617|emb|CAA68212
          Length = 358

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 18/55 (32%), Positives = 24/55 (43%)
 Frame = +1

Query: 31  GGIASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTYGPGQ*CSRF 195
           G  A+L   N S+ SP   +     +    G      V + GAHT+G GQ C  F
Sbjct: 157 GLTANLSGANSSLPSPFEGLNNITSKFVAVGLKTTDVVSLSGAHTFGRGQ-CVTF 210


>At5g05340.1 68418.m00575 peroxidase, putative similar to peroxidase
           [Nicotiana tabacum] gi|5381253|dbj|BAA82306; similar to
           Peroxidase P7 [Brassica rapa (Turnip)] SWISS-PROT:P00434
          Length = 324

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +1

Query: 58  NESIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTYGPGQ*CSRF 195
           N +I +PT S+          G S    V + GAHT G  + C+ F
Sbjct: 163 NSNIPAPTSSLSQLISSFSAVGLSTRDMVALSGAHTIGQSR-CTNF 207


>At1g03050.1 68414.m00277 epsin N-terminal homology (ENTH)
           domain-containing protein / clathrin assembly
           protein-related contains Pfam PF01417: ENTH domain. ENTH
           (Epsin N-terminal homology) domain; similar to CLATHRIN
           COAT ASSEMBLY PROTEIN AP180 - Mus musculus,
           SWISSPROT:Q61548
          Length = 599

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 122 PAPSHSSLNTPTLKVGLPIDSFRYFSEAIPPKY 24
           PAPS ++ N   +   +P+D F    E  PP Y
Sbjct: 519 PAPSTANGNAGNINSPVPMDPFAASLEVAPPAY 551


>At4g08960.1 68417.m01476 phosphotyrosyl phosphatase activator
           (PTPA) family protein similar to Protein phosphatase 2A,
           regulatory subunit B' (PP2A, subunit B', PR53 isoform)
           (Phosphotyrosyl phosphatase activator) (PTPA)
           (Swiss-Prot:Q28717) [Oryctolagus cuniculus]
          Length = 392

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 314 PPPRTRGIRATARPVPHDSXWFVDQP 237
           PPP  R IRA A  +PH+S   +  P
Sbjct: 55  PPPNYRPIRAPAINLPHNSQAIILSP 80


>At3g12430.1 68416.m01548 expressed protein ; expression supported
           by MPSS
          Length = 238

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -1

Query: 137 GAWLHPAPSHSSLNTPTLKVGLPID--SFRYFSEAIPPKY 24
           G W+H   SH+  ++  L VG+ +      Y+S + P +Y
Sbjct: 38  GQWIHDVLSHNRFSSHPLVVGVGVQWTPSSYYSASSPVRY 77


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,496,682
Number of Sequences: 28952
Number of extensions: 197804
Number of successful extensions: 600
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 722638680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -