BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0789 (446 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S... 86 1e-17 At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str... 86 1e-17 At2g35640.1 68415.m04371 hydroxyproline-rich glycoprotein family... 31 0.27 At5g17650.1 68418.m02069 glycine/proline-rich protein glycine/pr... 30 0.82 At5g06730.1 68418.m00761 peroxidase, putative similar to peroxid... 28 2.5 At5g05340.1 68418.m00575 peroxidase, putative similar to peroxid... 27 4.4 At1g03050.1 68414.m00277 epsin N-terminal homology (ENTH) domain... 27 5.8 At4g08960.1 68417.m01476 phosphotyrosyl phosphatase activator (P... 27 7.6 At3g12430.1 68416.m01548 expressed protein ; expression supporte... 27 7.6 >At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S roibosomal protein L4, Arabidopsis thaliana, EMBL:CAA79104 Length = 407 Score = 85.8 bits (203), Expect = 1e-17 Identities = 36/42 (85%), Positives = 39/42 (92%) Frame = +1 Query: 259 ESWGTGRAVARIPRVRGGGTHRSSQGAFGNMCRGGRMYAPTK 384 ESWGTGRAV+RIPRV GGGTHR+ Q AFGNMCRGGRM+APTK Sbjct: 71 ESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTK 112 Score = 59.7 bits (138), Expect = 9e-10 Identities = 31/64 (48%), Positives = 39/64 (60%), Gaps = 2/64 (3%) Frame = +2 Query: 68 SVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRMDLVNDVHVSMSKNSRQPYCVTSEA 241 + ARPLV+V + T Q LP V AP+R D+VN VH +S NSRQPY V+ +A Sbjct: 5 AAARPLVTVQGLDGDMSTDQSTTVTLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKA 64 Query: 242 GQQT 253 G QT Sbjct: 65 GHQT 68 >At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong similarity to 60S ribosomal protein L1 GB:P49691 Length = 406 Score = 85.8 bits (203), Expect = 1e-17 Identities = 36/42 (85%), Positives = 39/42 (92%) Frame = +1 Query: 259 ESWGTGRAVARIPRVRGGGTHRSSQGAFGNMCRGGRMYAPTK 384 ESWGTGRAV+RIPRV GGGTHR+ Q AFGNMCRGGRM+APTK Sbjct: 70 ESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTK 111 Score = 61.7 bits (143), Expect = 2e-10 Identities = 31/67 (46%), Positives = 43/67 (64%), Gaps = 2/67 (2%) Frame = +2 Query: 59 MSLSVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRMDLVNDVHVSMSKNSRQPYCVT 232 M+ + ARPLV++ + + T Q + LP V AP+R D+VN VH +S NSRQPY V+ Sbjct: 1 MAAAAARPLVTIQTLDGDMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVS 60 Query: 233 SEAGQQT 253 +AG QT Sbjct: 61 KKAGHQT 67 >At2g35640.1 68415.m04371 hydroxyproline-rich glycoprotein family protein contains proline-rich extensin domains, INTERPRO:IPR002965 Length = 340 Score = 31.5 bits (68), Expect = 0.27 Identities = 16/50 (32%), Positives = 23/50 (46%) Frame = -1 Query: 386 GFVGAYIRPPRHMLPKAP*LDLWVPPPRTRGIRATARPVPHDSXWFVDQP 237 GFV + P H +P L L PPP++ + + P P S F +P Sbjct: 174 GFVAPMMAQPMHQIPTTIVLSLPPPPPQSLSLSLPSPPQPPPSSSFHAEP 223 >At5g17650.1 68418.m02069 glycine/proline-rich protein glycine/proline-rich protein GPRP - Arabidopsis thaliana, EMBL:X84315 Length = 173 Score = 29.9 bits (64), Expect = 0.82 Identities = 11/24 (45%), Positives = 13/24 (54%) Frame = -2 Query: 361 HHDTCYRRHLDWTYGYHHHGHAEF 290 HH Y H YGY +HGH +F Sbjct: 122 HHHGHYGHHHGHGYGYGYHGHGKF 145 >At5g06730.1 68418.m00761 peroxidase, putative similar to peroxidase [Arabidopsis thaliana] gi|1491617|emb|CAA68212 Length = 358 Score = 28.3 bits (60), Expect = 2.5 Identities = 18/55 (32%), Positives = 24/55 (43%) Frame = +1 Query: 31 GGIASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTYGPGQ*CSRF 195 G A+L N S+ SP + + G V + GAHT+G GQ C F Sbjct: 157 GLTANLSGANSSLPSPFEGLNNITSKFVAVGLKTTDVVSLSGAHTFGRGQ-CVTF 210 >At5g05340.1 68418.m00575 peroxidase, putative similar to peroxidase [Nicotiana tabacum] gi|5381253|dbj|BAA82306; similar to Peroxidase P7 [Brassica rapa (Turnip)] SWISS-PROT:P00434 Length = 324 Score = 27.5 bits (58), Expect = 4.4 Identities = 15/46 (32%), Positives = 21/46 (45%) Frame = +1 Query: 58 NESIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTYGPGQ*CSRF 195 N +I +PT S+ G S V + GAHT G + C+ F Sbjct: 163 NSNIPAPTSSLSQLISSFSAVGLSTRDMVALSGAHTIGQSR-CTNF 207 >At1g03050.1 68414.m00277 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related contains Pfam PF01417: ENTH domain. ENTH (Epsin N-terminal homology) domain; similar to CLATHRIN COAT ASSEMBLY PROTEIN AP180 - Mus musculus, SWISSPROT:Q61548 Length = 599 Score = 27.1 bits (57), Expect = 5.8 Identities = 12/33 (36%), Positives = 17/33 (51%) Frame = -1 Query: 122 PAPSHSSLNTPTLKVGLPIDSFRYFSEAIPPKY 24 PAPS ++ N + +P+D F E PP Y Sbjct: 519 PAPSTANGNAGNINSPVPMDPFAASLEVAPPAY 551 >At4g08960.1 68417.m01476 phosphotyrosyl phosphatase activator (PTPA) family protein similar to Protein phosphatase 2A, regulatory subunit B' (PP2A, subunit B', PR53 isoform) (Phosphotyrosyl phosphatase activator) (PTPA) (Swiss-Prot:Q28717) [Oryctolagus cuniculus] Length = 392 Score = 26.6 bits (56), Expect = 7.6 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = -1 Query: 314 PPPRTRGIRATARPVPHDSXWFVDQP 237 PPP R IRA A +PH+S + P Sbjct: 55 PPPNYRPIRAPAINLPHNSQAIILSP 80 >At3g12430.1 68416.m01548 expressed protein ; expression supported by MPSS Length = 238 Score = 26.6 bits (56), Expect = 7.6 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%) Frame = -1 Query: 137 GAWLHPAPSHSSLNTPTLKVGLPID--SFRYFSEAIPPKY 24 G W+H SH+ ++ L VG+ + Y+S + P +Y Sbjct: 38 GQWIHDVLSHNRFSSHPLVVGVGVQWTPSSYYSASSPVRY 77 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 9,496,682 Number of Sequences: 28952 Number of extensions: 197804 Number of successful extensions: 600 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 579 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 597 length of database: 12,070,560 effective HSP length: 75 effective length of database: 9,899,160 effective search space used: 722638680 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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