Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0787
         (720 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15)                99   4e-21
SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   1.3  
SB_5387| Best HMM Match : DNA_pol_E_B (HMM E-Value=9.2e-35)            24   2.7  
SB_21206| Best HMM Match : PaREP8 (HMM E-Value=2.4)                    29   2.9  
SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75)               29   3.8  
SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   3.8  
SB_50787| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)                   28   6.6  
SB_6613| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.6  
SB_43823| Best HMM Match : MAM (HMM E-Value=0)                         28   6.6  
SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94)                  28   8.8  

>SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15)
          Length = 710

 Score = 98.7 bits (235), Expect = 4e-21
 Identities = 43/60 (71%), Positives = 51/60 (85%)
 Frame = +1

Query: 19  TTMGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKV 198
           T   ++ DT F +G+SGAS T+P QCS+LRKNG V++KGRPCKIVEMSTSKTGKHGHAKV
Sbjct: 585 TMAEELADTEFHSGESGASDTYPAQCSSLRKNGHVVIKGRPCKIVEMSTSKTGKHGHAKV 644



 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 29/62 (46%), Positives = 44/62 (70%)
 Frame = +3

Query: 297 QLTDISDDGYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKELLCTVLKSCGEECVIA 476
           ++T+I +DGYL LM DNGD R D+K+ D D+  ++R  F++ +  + TVLK+ GEE V+ 
Sbjct: 643 KVTNIEEDGYLELMDDNGDTRADIKLQDNDIAKEIRAKFEASENFMVTVLKAMGEETVVG 702

Query: 477 VK 482
           VK
Sbjct: 703 VK 704


>SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4538

 Score = 25.0 bits (52), Expect(2) = 1.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 35   SKTHTLRPETPGPQPPSPCNVRPCV 109
            SK+H ++  T GP+  SP N R  +
Sbjct: 4412 SKSHPMQARTQGPRTHSPYNGRKSI 4436



 Score = 23.8 bits (49), Expect(2) = 1.3
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +2

Query: 155  KCPHPKPESTATLKFTWLGLISSMVKSMK-ISVPHTQHGRTSREARRL 295
            K P   P    ++ FTW   ISS+  SM+  +    ++G    EA RL
Sbjct: 4474 KNPGYGPAKELSIAFTWGFSISSLRSSMQFFNCKQQKYGGKRAEAGRL 4521


>SB_5387| Best HMM Match : DNA_pol_E_B (HMM E-Value=9.2e-35)
          Length = 458

 Score = 24.2 bits (50), Expect(2) = 2.7
 Identities = 13/53 (24%), Positives = 26/53 (49%)
 Frame = +2

Query: 83  SPCNVRPCVKMVSLC*RVVHARLLKCPHPKPESTATLKFTWLGLISSMVKSMK 241
           +PC ++ C + +S+    V   ++K P   P    TL   ++G  +  +K +K
Sbjct: 398 NPCRIQYCTQEISMTPIHVLLLIVKAPILDPSLVVTLCSRFIGHQARKLKIVK 450



 Score = 23.8 bits (49), Expect(2) = 2.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 65  PGPQPPSPCNVRP 103
           PGPQ P P N+ P
Sbjct: 362 PGPQDPGPGNILP 374


>SB_21206| Best HMM Match : PaREP8 (HMM E-Value=2.4)
          Length = 589

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
 Frame = +1

Query: 370 KSRMVTSAHSCVLTSTAARNCCAPC*NPAVRSASSPSK--QTQLSTNKQLSIYRINKLLI 543
           K R   S HSC+         C+       +SA S  +   + + T + LSIYR+ + ++
Sbjct: 316 KIRANNSQHSCITKKNYMHRSCSTLSVLHAKSALSYYRILYSTVCTQRLLSIYRLPETVV 375

Query: 544 FYNQ-QLLH 567
           ++ Q Q+ H
Sbjct: 376 YFEQPQIAH 384


>SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75)
          Length = 568

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +2

Query: 32  TSKTHTLRPETPGPQPPSPCNVRPCVKMVSLC*RVVH-ARLLKCPH 166
           T+K HT +P T  P    P N+ P +   +L   ++H     + PH
Sbjct: 168 TTKPHTTKPHTTKPHTTKPHNIDPTLPSPTLLNALLHFLYFYQAPH 213



 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 8   KFKTQQWVTSKTHTLRPETPGPQPPSPCNVRPC 106
           K KT +  T+K +T +P T  P+   P   +PC
Sbjct: 100 KPKTTKPHTNKPYTTKPRTTKPRTTKPHTTKPC 132


>SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query: 109 KNGFVMLKGRPCKIV-EMSTSKTGKHGHAKVHLVGIDIFNG 228
           + G +M +G+PCKI   +   K G HG   +H+ G D  NG
Sbjct: 17  RRGVMMAEGKPCKITGTIEGLKAGNHGF-HIHVYG-DNTNG 55


>SB_50787| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 599

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = -1

Query: 273 VRPCCV*GTDIFILFTIEDINPNQVNFSVAVLSGFGCGHFNNLAWTTLQHNETIFTQ 103
           +R C   G D+  +F   + +    + S A ++ +G GH N +    L H   + TQ
Sbjct: 244 LRSCITHGDDLLSVFDNMESSSKVFDMSNAPVTRYGLGHVNQILEEELSHLRFLKTQ 300


>SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)
          Length = 492

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = -3

Query: 457 PQDFSTVHNNSLPLSKSVRNCVPRSPSGILRSSRRSPLSAIRVR 326
           P+  S V + +LP+   V  C+P SPS I RS    P     VR
Sbjct: 253 PRQISNVRSLTLPVRYQVIGCLP-SPSDIKRSVPYPPRQISNVR 295


>SB_6613| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 523

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
 Frame = +3

Query: 246 LSLTHNMDVPHVKREDYQLTDISDDGYLT----LMADNGDLREDLKIPDGDLGTQLRTDF 413
           L+ +  +D+P+ K + + L  ++DD  L+    +  D   L E L  PD  +    R   
Sbjct: 31  LNKSKYLDIPYEKYDKFDLESLTDDECLSEFRFIKNDLYRLNEALNFPD-QITCPNRLTV 89

Query: 414 DSGKELLCTVLKSCGEEC 467
           D G E LC  L+     C
Sbjct: 90  D-GMEALCMTLRRFAYPC 106


>SB_43823| Best HMM Match : MAM (HMM E-Value=0)
          Length = 1724

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = -3

Query: 121  RNHFYAGPNIAW--GRWLRPRSLRSQSV 44
            R  F+  PN+A   G+WL P+SLR+  V
Sbjct: 947  REGFFNNPNLAGCKGQWLGPKSLRASRV 974


>SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94)
          Length = 1058

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = +2

Query: 2   VVKFKTQQWVTSKTHTLRPETPGPQPPSPCNVRP 103
           VV     + VT K  T +P TP P  P P   RP
Sbjct: 759 VVAMPAARPVTPKPVTPKPVTPKPVTPKPVTTRP 792


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,352,729
Number of Sequences: 59808
Number of extensions: 502744
Number of successful extensions: 1534
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1522
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)