Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0787
         (720 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49967-1|CAA90247.1|  161|Caenorhabditis elegans Hypothetical pr...   135   3e-32
Z27079-13|CAA81597.2|  195|Caenorhabditis elegans Hypothetical p...   123   1e-28
CU457743-2|CAM36365.1|  695|Caenorhabditis elegans Hypothetical ...    31   0.83 
AF003386-14|AAK82896.1|  811|Caenorhabditis elegans Hypothetical...    29   4.4  
Z93378-5|CAB07584.3| 1229|Caenorhabditis elegans Hypothetical pr...    28   5.8  
AJ811574-1|CAH18872.1| 1229|Caenorhabditis elegans putative treh...    28   5.8  
AJ512333-1|CAD54507.2| 1230|Caenorhabditis elegans trehalose-6-p...    28   5.8  
Z70310-6|CAE17904.1|  293|Caenorhabditis elegans Hypothetical pr...    28   7.7  
U40958-5|AAA81764.1|  654|Caenorhabditis elegans Hypothetical pr...    28   7.7  
AY204179-1|AAO39183.1|  486|Caenorhabditis elegans nuclear recep...    28   7.7  
AF332209-1|AAK17980.1|  350|Caenorhabditis elegans nuclear recep...    28   7.7  
AF078783-3|AAN63404.1|  504|Caenorhabditis elegans Nuclear hormo...    28   7.7  
AF078783-2|AAK82901.1|  486|Caenorhabditis elegans Nuclear hormo...    28   7.7  

>Z49967-1|CAA90247.1|  161|Caenorhabditis elegans Hypothetical
           protein F54C9.1 protein.
          Length = 161

 Score =  135 bits (326), Expect = 3e-32
 Identities = 60/73 (82%), Positives = 64/73 (87%)
 Frame = +1

Query: 37  EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 216
           +D HF TGDSGA+ATFP QCSALRKN  VM+KGRPCKIVEMSTSKTGKHGHAKVH+V ID
Sbjct: 7   DDEHFHTGDSGAAATFPKQCSALRKNEHVMIKGRPCKIVEMSTSKTGKHGHAKVHMVAID 66

Query: 217 IFNGKKYEDICPS 255
           IF  KK EDICPS
Sbjct: 67  IFTSKKLEDICPS 79



 Score = 67.7 bits (158), Expect = 8e-12
 Identities = 35/81 (43%), Positives = 54/81 (66%), Gaps = 2/81 (2%)
 Frame = +3

Query: 255 THNMDVPHVKREDYQLTDISDDGYLTLM-ADNGDLREDLKIPDGDLGTQLRTDFDSGK-E 428
           THNMDVP VKR +Y L  I DDGY +LM  ++ + ++DLK+PD +LG Q+R  ++  +  
Sbjct: 80  THNMDVPVVKRREYLLMAI-DDGYCSLMDPESCEQKDDLKLPDTELGQQIRDAYEKDEGS 138

Query: 429 LLCTVLKSCGEECVIAVKANT 491
           +L  V+ + GEE ++  K +T
Sbjct: 139 VLVQVVSAIGEEAILGWKVST 159


>Z27079-13|CAA81597.2|  195|Caenorhabditis elegans Hypothetical
           protein T05G5.10 protein.
          Length = 195

 Score =  123 bits (297), Expect = 1e-28
 Identities = 54/73 (73%), Positives = 63/73 (86%)
 Frame = +1

Query: 37  EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 216
           ++  F++ +SGA+ATFP QCSALRKN  VM++GRPCKIVEMSTSKTGKHGHAKVH+V ID
Sbjct: 41  DEEQFDSAESGAAATFPKQCSALRKNEHVMIRGRPCKIVEMSTSKTGKHGHAKVHMVAID 100

Query: 217 IFNGKKYEDICPS 255
           IF  KK EDICPS
Sbjct: 101 IFTTKKLEDICPS 113



 Score = 70.9 bits (166), Expect = 8e-13
 Identities = 35/81 (43%), Positives = 55/81 (67%), Gaps = 2/81 (2%)
 Frame = +3

Query: 255 THNMDVPHVKREDYQLTDISDDGYLTLM-ADNGDLREDLKIPDGDLGTQLRTDFDSGK-E 428
           THNMDVP VKR +Y L  I +DG+ +LM  ++ +L++DLK+P+GDLG  +R   +  +  
Sbjct: 114 THNMDVPVVKRREYILMSI-EDGFCSLMDPESCELKDDLKMPEGDLGNTIREALEKDEGS 172

Query: 429 LLCTVLKSCGEECVIAVKANT 491
           +L  V+ +CGEE ++  K +T
Sbjct: 173 VLVQVVAACGEEAILGYKIST 193


>CU457743-2|CAM36365.1|  695|Caenorhabditis elegans Hypothetical
           protein K09E10.2 protein.
          Length = 695

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
 Frame = +3

Query: 261 NMDVPHVKREDYQLTDI--SDDGYLTLMADNGDLREDLKIPDGDLGTQLRTD-FDSGKEL 431
           N  +P +K++ Y L     ++ GY+  +   GDL+   KI D      LR D ++ G+  
Sbjct: 573 NKFIPFIKKKLYILDSFPRANSGYIARVP--GDLKNGKKIEDISKA-MLRPDGYERGRLR 629

Query: 432 LCTVLKSCGEEC 467
              ++K CG++C
Sbjct: 630 HAALVKECGDKC 641


>AF003386-14|AAK82896.1|  811|Caenorhabditis elegans Hypothetical
           protein F59E12.1 protein.
          Length = 811

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +2

Query: 32  TSKTHTLRPETPGPQPPSPCNVRP 103
           T K  T R E+P P PP P   RP
Sbjct: 358 TEKPETPRAESPDPLPPPPSKKRP 381


>Z93378-5|CAB07584.3| 1229|Caenorhabditis elegans Hypothetical
           protein F19H8.1 protein.
          Length = 1229

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 20/59 (33%), Positives = 32/59 (54%)
 Frame = -3

Query: 592 IHNIMFYIYVRVVDCKKLKVC*SYKC*VVYLSRAVFALTAMTHSSPQDFSTVHNNSLPL 416
           +HN+  YI     D K L+   ++ C  V ++   FA+ A+ +S PQDF  +H+  L L
Sbjct: 394 LHNLPEYIVSEYDDEKILR---AHWCAYVRVNYQ-FAIDAVRNSRPQDFIWIHDYHLML 448


>AJ811574-1|CAH18872.1| 1229|Caenorhabditis elegans putative
           trehalose 6-phosphatesynthase protein.
          Length = 1229

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 20/59 (33%), Positives = 32/59 (54%)
 Frame = -3

Query: 592 IHNIMFYIYVRVVDCKKLKVC*SYKC*VVYLSRAVFALTAMTHSSPQDFSTVHNNSLPL 416
           +HN+  YI     D K L+   ++ C  V ++   FA+ A+ +S PQDF  +H+  L L
Sbjct: 394 LHNLPEYIVSEYDDEKILR---AHWCAYVRVNYQ-FAIDAVRNSRPQDFIWIHDYHLML 448


>AJ512333-1|CAD54507.2| 1230|Caenorhabditis elegans
           trehalose-6-phosphate synthase protein.
          Length = 1230

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 20/59 (33%), Positives = 32/59 (54%)
 Frame = -3

Query: 592 IHNIMFYIYVRVVDCKKLKVC*SYKC*VVYLSRAVFALTAMTHSSPQDFSTVHNNSLPL 416
           +HN+  YI     D K L+   ++ C  V ++   FA+ A+ +S PQDF  +H+  L L
Sbjct: 394 LHNLPEYIVSEYDDEKILR---AHWCAYVRVNYQ-FAIDAVRNSRPQDFIWIHDYHLML 448


>Z70310-6|CAE17904.1|  293|Caenorhabditis elegans Hypothetical
           protein R11A8.8 protein.
          Length = 293

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 321 GYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKELLC 437
           GYL      GD ++++K+ +G    Q+ +D D  K   C
Sbjct: 251 GYLPQQPKKGDKKKNIKLKEGRTEHQIVSDIDPAKLRAC 289


>U40958-5|AAA81764.1|  654|Caenorhabditis elegans Hypothetical
           protein F09F9.4 protein.
          Length = 654

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -2

Query: 119 KPFLRRAEHCMGKVAEAPESPVSKCVSSMSP 27
           +P  +R+++C G + E  E  ++KC  +M P
Sbjct: 345 EPVPKRSKYCDGPLIETQECTLTKCPEAMMP 375


>AY204179-1|AAO39183.1|  486|Caenorhabditis elegans nuclear receptor
           NHR-80 protein.
          Length = 486

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
 Frame = +2

Query: 2   VVKFKTQQWVTSKTH-----TLRPETPGPQPPSPCNVRPCV 109
           V+K  T + ++S T      T    TPGP P +PC+  P V
Sbjct: 149 VIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCSAGPDV 189


>AF332209-1|AAK17980.1|  350|Caenorhabditis elegans nuclear receptor
           NHR-80 protein.
          Length = 350

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
 Frame = +2

Query: 2   VVKFKTQQWVTSKTH-----TLRPETPGPQPPSPCNVRPCV 109
           V+K  T + ++S T      T    TPGP P +PC+  P V
Sbjct: 13  VIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCSAGPDV 53


>AF078783-3|AAN63404.1|  504|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 80, isoform b protein.
          Length = 504

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
 Frame = +2

Query: 2   VVKFKTQQWVTSKTH-----TLRPETPGPQPPSPCNVRPCV 109
           V+K  T + ++S T      T    TPGP P +PC+  P V
Sbjct: 167 VIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCSAGPDV 207


>AF078783-2|AAK82901.1|  486|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 80, isoform a protein.
          Length = 486

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
 Frame = +2

Query: 2   VVKFKTQQWVTSKTH-----TLRPETPGPQPPSPCNVRPCV 109
           V+K  T + ++S T      T    TPGP P +PC+  P V
Sbjct: 149 VIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCSAGPDV 189


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,962,214
Number of Sequences: 27780
Number of extensions: 364008
Number of successful extensions: 1171
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1166
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)