Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0787
(720 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g13950.1 68414.m01639 eukaryotic translation initiation facto... 113 1e-25
At1g69410.1 68414.m07972 eukaryotic translation initiation facto... 109 1e-24
At1g26630.1 68414.m03243 eukaryotic translation initiation facto... 104 5e-23
At3g06450.1 68416.m00746 anion exchange family protein similar t... 32 0.44
At5g14230.1 68418.m01663 ankyrin repeat family protein contains ... 29 3.1
At5g03140.1 68418.m00262 lectin protein kinase family protein co... 29 4.1
At3g51290.1 68416.m05614 proline-rich family protein 28 5.4
At3g49180.1 68416.m05375 transducin family protein / WD-40 repea... 28 7.2
At2g33480.1 68415.m04104 no apical meristem (NAM) family protein... 28 7.2
At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-... 27 9.5
At3g46960.1 68416.m05099 DEAD/DEAH box helicase, putative simila... 27 9.5
At2g28550.1 68415.m03468 AP2 domain-containing transcription fac... 27 9.5
At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein... 27 9.5
>At1g13950.1 68414.m01639 eukaryotic translation initiation factor
5A-1 / eIF-5A 1 identical to SP|Q9XI91 Eukaryotic
translation initiation factor 5A-1 (eIF-5A 1)
{Arabidopsis thaliana}
Length = 158
Score = 113 bits (272), Expect = 1e-25
Identities = 47/73 (64%), Positives = 58/73 (79%)
Frame = +1
Query: 37 EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 216
E+ HFE+ D+GAS T+P Q +RKNG++++K RPCK+VE+STSKTGKHGHAK H V ID
Sbjct: 4 EEHHFESSDAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAID 63
Query: 217 IFNGKKYEDICPS 255
IF KK EDI PS
Sbjct: 64 IFTSKKLEDIVPS 76
Score = 91.9 bits (218), Expect = 4e-19
Identities = 40/77 (51%), Positives = 59/77 (76%), Gaps = 1/77 (1%)
Frame = +3
Query: 255 THNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGD-LGTQLRTDFDSGKEL 431
+HN DVPHV R DYQL DIS+DGY++L+ DNG ++DLK+P+ D L Q+++ FD GK+L
Sbjct: 77 SHNCDVPHVNRTDYQLIDISEDGYVSLLTDNGSTKDDLKLPNDDTLLQQIKSGFDDGKDL 136
Query: 432 LCTVLKSCGEECVIAVK 482
+ +V+ + GEE + A+K
Sbjct: 137 VVSVMSAMGEEQINALK 153
>At1g69410.1 68414.m07972 eukaryotic translation initiation factor
5A, putative / eIF-5A, putative strong similarity to
eukaryotic initiation factor 5A (2) (Nicotiana
plumbaginifolia) GI:19702, SP|Q9AXQ6| Eukaryotic
translation initiation factor 5A-1 (eIF-5A 1)
{Lycopersicon esculentum}
Length = 158
Score = 109 bits (263), Expect = 1e-24
Identities = 46/73 (63%), Positives = 57/73 (78%)
Frame = +1
Query: 37 EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 216
++ HFE+ D+GAS T+P Q +RK G +++KGRPCK+VE+STSKTGKHGHAK H V ID
Sbjct: 4 DEHHFESSDAGASKTYPQQAGNIRKGGHIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAID 63
Query: 217 IFNGKKYEDICPS 255
IF KK EDI PS
Sbjct: 64 IFTSKKLEDIVPS 76
Score = 88.6 bits (210), Expect = 4e-18
Identities = 39/77 (50%), Positives = 58/77 (75%), Gaps = 1/77 (1%)
Frame = +3
Query: 255 THNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLGTQLRTDFDSGKEL 431
+HN DVPHV R DYQL DIS+DG+++L+ DNG ++DLK+P D L TQL+ F+ GK++
Sbjct: 77 SHNCDVPHVNRVDYQLIDISEDGFVSLLTDNGSTKDDLKLPTDEALLTQLKNGFEEGKDI 136
Query: 432 LCTVLKSCGEECVIAVK 482
+ +V+ + GEE + A+K
Sbjct: 137 VVSVMSAMGEEQMCALK 153
>At1g26630.1 68414.m03243 eukaryotic translation initiation factor
5A, putative / eIF-5A, putative strong similariy to
SP|Q9AXQ6 Eukaryotic translation initiation factor 5A-1
(eIF-5A 1) {Lycopersicon esculentum}
Length = 159
Score = 104 bits (250), Expect = 5e-23
Identities = 44/73 (60%), Positives = 54/73 (73%)
Frame = +1
Query: 37 EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 216
++ HFE +SGAS T+P +RK G +++K RPCK+VE+STSKTGKHGHAK H V ID
Sbjct: 4 DEHHFEASESGASKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAID 63
Query: 217 IFNGKKYEDICPS 255
IF KK EDI PS
Sbjct: 64 IFTAKKLEDIVPS 76
Score = 89.4 bits (212), Expect = 2e-18
Identities = 39/77 (50%), Positives = 57/77 (74%), Gaps = 1/77 (1%)
Frame = +3
Query: 255 THNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLGTQLRTDFDSGKEL 431
+HN DVPHV R DYQL DI++DG+++L+ D+G ++DLK+P D L Q+R FD GK++
Sbjct: 77 SHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLPTDDGLTAQMRLGFDEGKDI 136
Query: 432 LCTVLKSCGEECVIAVK 482
+ +V+ S GEE + AVK
Sbjct: 137 VVSVMSSMGEEQICAVK 153
>At3g06450.1 68416.m00746 anion exchange family protein similar to
putative Anion exchanger family members: GB:AAD39673,
GB:AAD55295 [Arabidopsis thaliana]
Length = 732
Score = 31.9 bits (69), Expect = 0.44
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -1
Query: 678 IASDVSEGEAPRGLRAPPLYYYSFFKLNLYTILC 577
+AS +++ E LR PP Y+Y F L TILC
Sbjct: 316 VASQLAQQE-DFNLRKPPAYHYDLFLLGFLTILC 348
>At5g14230.1 68418.m01663 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 591
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = +3
Query: 366 LKIPDGDLGTQLRTDFDSGKELLCTVLKSCGEEC 467
L IPDGD T L G +C L SCG C
Sbjct: 412 LDIPDGDGYTPLMLAAREGHGHMCEYLISCGANC 445
>At5g03140.1 68418.m00262 lectin protein kinase family protein
contains Pfam domains, PF00138: Legume lectins alpha
domain, PF00139: Legume lectins beta domain and PF00069:
Protein kinase domain
Length = 711
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -2
Query: 137 RPFSITKPFLRRAEHCMGKVAEAPESPVSKCVSSMS 30
+P +T+P +R + A+ PE P++K SSMS
Sbjct: 631 QPDPVTRPTMRSVVQILVGEADVPEVPIAKPSSSMS 666
>At3g51290.1 68416.m05614 proline-rich family protein
Length = 602
Score = 28.3 bits (60), Expect = 5.4
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 14 KTQQWVTSKTHTLRPETPGPQPPSP 88
+T W T+ T ++ P P P PP P
Sbjct: 91 ETTTWTTTTTSSVLPPPPPPPPPPP 115
>At3g49180.1 68416.m05375 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
GTP-binding protein beta chain homolog, Nicotiana
tabacum, PIR:T16970
Length = 438
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -2
Query: 494 SCVCFDGDDALLTAGFQHGA 435
+C+ F GDD+LL +G Q G+
Sbjct: 124 TCLVFSGDDSLLVSGSQDGS 143
>At2g33480.1 68415.m04104 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain;
Length = 268
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/49 (32%), Positives = 20/49 (40%)
Frame = +1
Query: 400 CVLTSTAARNCCAPC*NPAVRSASSPSKQTQLSTNKQLSIYRINKLLIF 546
C L T A CC + SS T + N+Q YR NK +F
Sbjct: 219 CDLNLTPATCCCCSSSTSSSSVCSSALTHTSSNDNRQEISYRENKFCLF 267
>At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-box
RNA helicase [Chlamydomonas reinhardtii] GI:12044832;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1226
Score = 27.5 bits (58), Expect = 9.5
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +3
Query: 279 VKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGDL-GTQLRTDFDSGKE 428
V+R+ +++ Y L ADN + + G + GT+++T+FDS +E
Sbjct: 350 VRRDGSKMSLAQSKKYSQLNADNAQWEDRQLLRSGAVRGTEVQTEFDSEEE 400
>At3g46960.1 68416.m05099 DEAD/DEAH box helicase, putative similar to
SP|P35207 Antiviral protein SKI2 {Saccharomyces
cerevisiae}; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 1347
Score = 27.5 bits (58), Expect = 9.5
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 6/51 (11%)
Frame = +3
Query: 309 ISDDGYLTLMADNG--DLREDLKIPDGDLGTQLR----TDFDSGKELLCTV 443
+SD+ L + A G D+ +++ D DL Q++ + +SG+EL+CTV
Sbjct: 1141 MSDEALLQMPAFQGRIDVLKNIGCIDDDLVVQIKGRVACEMNSGEELICTV 1191
>At2g28550.1 68415.m03468 AP2 domain-containing transcription factor
RAP2.7 (RAP2.7) nearly identical to AP2 domain
transcription factor RAP2.7 (GI:2281639) [Arabidopsis
thaliana]
Length = 449
Score = 27.5 bits (58), Expect = 9.5
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +2
Query: 38 KTHTLRPETPGPQPP 82
+T +RP+ PGPQPP
Sbjct: 402 QTSAVRPQPPGPQPP 416
>At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein
contains INTERPRO domain, IPR001878: Zn-finger CCHC type
Length = 353
Score = 27.5 bits (58), Expect = 9.5
Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Frame = +2
Query: 38 KTHTLRPETPGPQPPS---PCNVRPCVKMVSLC*RVVHARLLKCP 163
KT T P PP PCN PC + S + + R CP
Sbjct: 22 KTTTKPTAAAAPSPPDIHCPCNAGPCNTVTSKTEKNPNRRFYTCP 66
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,794,554
Number of Sequences: 28952
Number of extensions: 335159
Number of successful extensions: 1035
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1032
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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