Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0785
         (599 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.05 |ptp4||phosphatidate cytidylyltransferase Ptp4 |Schiz...    27   2.1  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    26   3.7  
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom...    25   8.5  
SPBC20F10.10 |||cyclin pho85 family|Schizosaccharomyces pombe|ch...    25   8.5  

>SPBC3D6.05 |ptp4||phosphatidate cytidylyltransferase Ptp4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 218

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -1

Query: 587 YIVS*LFNSGETIDESQGNLPPPWRCVVDPYLHAW 483
           Y+   LF +G     +Q  +P PW C+++ ++ A+
Sbjct: 157 YVYWGLFRTGPDSLAAQSRIPFPWLCLINGFIGAF 191


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1213

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = +2

Query: 365 DVKFRKIYMRACNPADNIVRGSEGAVDEDAWLLHGV--LVITRHGDRGPLHISKEVVNYL 538
           D+ F ++Y  +     +IV G    V   A+ LHGV  +     G     ++S+  +NY 
Sbjct: 778 DIVFDRVYNVSTKALFHIVFGDRSTVLSGAYNLHGVDDVEFLPWGKDPKTNLSRRYINYK 837

Query: 539 V 541
           V
Sbjct: 838 V 838


>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 903

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
 Frame = -3

Query: 483  VITSTPCNNQASSSTAPSEPLTILSAGLQALIYIFLNLTSLFDMY*SLYIFLGM-LISSL 307
            V+ S  C ++ +  T P   L  +S  L     +F+N+  L + Y      L   LI SL
Sbjct: 796  VLKSRACKHKEAKYTCPEIFLNAVSDKLVNTAVLFINIELLSEFYYQFPRELDQRLIHSL 855

Query: 306  TDMYLYITVMRT-KIQRLSRGNNKKLCDEMKASSFHSL 196
            +   L   V    +++   +  +K+ C E+     +SL
Sbjct: 856  SSEQLNAFVNENPRLKSQLQLQHKRQCLELALQKINSL 893


>SPBC20F10.10 |||cyclin pho85 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -1

Query: 215 LHHFTHYSVFICEYRRHF*LLPTHITAYRISMYIVFLFSTMEKVG 81
           +HHF H++VFI  +  H  L+     A +    + +  S   KVG
Sbjct: 111 VHHF-HFTVFINSFNIHRFLIAGFTAASKFFSDVFYTNSRYAKVG 154


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,329,329
Number of Sequences: 5004
Number of extensions: 44578
Number of successful extensions: 118
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)