Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0785
         (599 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_04_0003 - 14989160-14989445,14989673-14989807,14991418-149915...    29   3.8  
11_01_0405 + 3079275-3079622,3079816-3079903,3081411-3081543,308...    28   6.6  
09_04_0032 - 13953323-13955269                                         28   6.6  
05_02_0053 - 6152204-6152329,6152817-6152981,6154698-6154883,615...    28   6.6  
06_03_1174 - 28164003-28164350,28164504-28164680,28165147-28166178     27   8.7  

>01_04_0003 -
           14989160-14989445,14989673-14989807,14991418-14991508,
           14991571-14991712,14991924-14992403,14992610-14993548
          Length = 690

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 495 SPCLVITSTPCNNQASSSTAPSEPL 421
           SP  +    PCN   S+ST+P+ PL
Sbjct: 64  SPSFMNDQIPCNTMKSASTSPASPL 88


>11_01_0405 +
           3079275-3079622,3079816-3079903,3081411-3081543,
           3081642-3082395
          Length = 440

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 504 GPLSPCLVITSTPCNNQASSSTAPSEPLTILSAGL 400
           GP   C ++ S P ++  +  T PS+P +IL+  L
Sbjct: 251 GPRRMCCLMHSIPASSLEAGGTVPSQPDSILAHSL 285


>09_04_0032 - 13953323-13955269
          Length = 648

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 513 MCSGPLSPCLVITSTPCNNQASSSTAPSEP 424
           +C GPLSPC   TS P  + + S   P  P
Sbjct: 223 LCGGPLSPC-TNTSPPSPSPSPSPPIPPPP 251


>05_02_0053 -
           6152204-6152329,6152817-6152981,6154698-6154883,
           6155055-6155078,6155649-6155822
          Length = 224

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 18/32 (56%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = -3

Query: 501 PLSPCLVIT-STPCNNQASSSTAPSEPLTILS 409
           PL   LV+T STP  + ASSST+PS P  +LS
Sbjct: 7   PLPRRLVVTASTPACSSASSSTSPS-PHCLLS 37


>06_03_1174 - 28164003-28164350,28164504-28164680,28165147-28166178
          Length = 518

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 25/109 (22%), Positives = 49/109 (44%)
 Frame = -3

Query: 576 VTFQQWXXXXXXXXXXXTSLEMCSGPLSPCLVITSTPCNNQASSSTAPSEPLTILSAGLQ 397
           + F +W           ++L +CS  L+ CL++ S P + + ++          L   LQ
Sbjct: 314 MVFGKWAQDALSKLSNLSNLTICSNSLTACLIVPSLP-DEERTTQLKWLGGFRRLKE-LQ 371

Query: 396 ALIYIFLNLTSLFDMY*SLYIFLGMLISSLTDMYLYITVMRTKIQRLSR 250
            L++  +   ++FD+Y  L  F      +LT ++L +  +R  +Q   R
Sbjct: 372 LLMF-DIKTINVFDIYAFLQSF---HFPNLTKLFLQLPRIREDVQEAVR 416


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,294,077
Number of Sequences: 37544
Number of extensions: 258868
Number of successful extensions: 687
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)