Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0785
         (599 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25725| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_54628| Best HMM Match : RecR (HMM E-Value=0.062)                    28   5.0  
SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  

>SB_25725| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 489

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 20/63 (31%), Positives = 28/63 (44%)
 Frame = +2

Query: 320 SIPKKIYKDQYISKSDVKFRKIYMRACNPADNIVRGSEGAVDEDAWLLHGVLVITRHGDR 499
           S+ + I KDQ I    + +   YMR  N   N        VD DA+ ++G   +  HG  
Sbjct: 248 SVERSISKDQEI----IVYGVDYMREVNKLMNQFSNRSAHVDPDAYDVYGNYSVIAHGSY 303

Query: 500 GPL 508
            PL
Sbjct: 304 QPL 306


>SB_54628| Best HMM Match : RecR (HMM E-Value=0.062)
          Length = 1082

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 23/85 (27%), Positives = 37/85 (43%)
 Frame = +2

Query: 287 MYKYMSVSEEISIPKKIYKDQYISKSDVKFRKIYMRACNPADNIVRGSEGAVDEDAWLLH 466
           +Y    V  +IS+ +K   +    K  +K     ++A    DNI R  E   + + WLL 
Sbjct: 72  LYVLEDVRAKISLLEKAIDEVGSVKKSLKISAADVKA-QIRDNISRHLEALRNRETWLLS 130

Query: 467 GVLVITRHGDRGPLHISKEVVNYLV 541
            V V+ +HG    L +    +N  V
Sbjct: 131 QVEVL-QHGKEDVLRLQHAELNQAV 154


>SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1554

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +2

Query: 347  QYISKSDVKFRKIYMRACNPADNIVRGSEGAVDEDAWLLHGVL 475
            Q I    +K   +Y+     +D +V GSE + D+ +WL+  V+
Sbjct: 1213 QLILPECMKLLPLYINCVLKSDALVGGSEMSSDDRSWLMRRVI 1255


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,127,129
Number of Sequences: 59808
Number of extensions: 326112
Number of successful extensions: 883
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)