Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0785
         (599 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071729-1|AAL49351.1|  587|Drosophila melanogaster RH44874p pro...    55   9e-08
AE014134-355|AAF51292.1|  587|Drosophila melanogaster CG15385-PA...    55   9e-08
BT015197-1|AAT94426.1|  954|Drosophila melanogaster RE71183p pro...    29   3.7  
AE014296-2238|AAF49848.1|  954|Drosophila melanogaster CG11274-P...    29   3.7  

>AY071729-1|AAL49351.1|  587|Drosophila melanogaster RH44874p
           protein.
          Length = 587

 Score = 54.8 bits (126), Expect = 9e-08
 Identities = 37/114 (32%), Positives = 54/114 (47%), Gaps = 13/114 (11%)
 Frame = +2

Query: 230 QSFLLLPRLSLWIFVLITVMYKYMSVSEEISIPKKIYK------------DQYISKSDVK 373
           ++F     LS+WIF+LI  MY+YM   E       ++             D   S +  +
Sbjct: 15  RAFYCYVLLSVWIFLLIAGMYRYMGNVESTPSGGSVFGPSSSGTVSSLGGDSSPSSTAQR 74

Query: 374 FRKIYMRACNPADNIVRGSEGAVDEDAWLLHGVLVITRHGDRGPL-HISKEVVN 532
           F K Y   C P   + R  +G + E  W L GVL++ RHGDRGP+ H+    +N
Sbjct: 75  FAK-YRERCAPLAQLQRLDDGGILE-GWKLQGVLLVIRHGDRGPISHVRSAGIN 126



 Score = 32.3 bits (70), Expect = 0.52
 Identities = 10/20 (50%), Positives = 17/20 (85%)
 Frame = +3

Query: 192 RIMSEMMKLSFHHRAFYCYL 251
           R++ E+M+++  HRAFYCY+
Sbjct: 2   RLLKELMRVATQHRAFYCYV 21


>AE014134-355|AAF51292.1|  587|Drosophila melanogaster CG15385-PA
           protein.
          Length = 587

 Score = 54.8 bits (126), Expect = 9e-08
 Identities = 37/114 (32%), Positives = 54/114 (47%), Gaps = 13/114 (11%)
 Frame = +2

Query: 230 QSFLLLPRLSLWIFVLITVMYKYMSVSEEISIPKKIYK------------DQYISKSDVK 373
           ++F     LS+WIF+LI  MY+YM   E       ++             D   S +  +
Sbjct: 15  RAFYCYVLLSVWIFLLIAGMYRYMGNVESTPSGGSVFGPSSSGTVSSLGGDSSPSSTAQR 74

Query: 374 FRKIYMRACNPADNIVRGSEGAVDEDAWLLHGVLVITRHGDRGPL-HISKEVVN 532
           F K Y   C P   + R  +G + E  W L GVL++ RHGDRGP+ H+    +N
Sbjct: 75  FAK-YRERCAPLAQLQRLDDGGILE-GWKLQGVLLVIRHGDRGPISHVRSAGIN 126



 Score = 32.3 bits (70), Expect = 0.52
 Identities = 10/20 (50%), Positives = 17/20 (85%)
 Frame = +3

Query: 192 RIMSEMMKLSFHHRAFYCYL 251
           R++ E+M+++  HRAFYCY+
Sbjct: 2   RLLKELMRVATQHRAFYCYV 21


>BT015197-1|AAT94426.1|  954|Drosophila melanogaster RE71183p protein.
          Length = 954

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = +2

Query: 302  SVSEEISIPKKIYKDQYISKSDVKFRKIYMRACNPADNIV-RGSEGAVDEDAWLLHGVLV 478
            S SE  S  KK  K +  SK   K +K + R C+   +     S+G+ DED  L H V  
Sbjct: 854  SDSEASSKRKKHKKHKKHSKKSKKHKK-HKRKCSAGKSRADSSSQGSSDEDEQLPHSV-A 911

Query: 479  ITRHGDRGPL 508
              R+G+ G L
Sbjct: 912  AKRNGNAGKL 921


>AE014296-2238|AAF49848.1|  954|Drosophila melanogaster CG11274-PA
            protein.
          Length = 954

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = +2

Query: 302  SVSEEISIPKKIYKDQYISKSDVKFRKIYMRACNPADNIV-RGSEGAVDEDAWLLHGVLV 478
            S SE  S  KK  K +  SK   K +K + R C+   +     S+G+ DED  L H V  
Sbjct: 854  SDSEASSKRKKHKKHKKHSKKSKKHKK-HKRKCSAGKSRADSSSQGSSDEDEQLPHSV-A 911

Query: 479  ITRHGDRGPL 508
              R+G+ G L
Sbjct: 912  AKRNGNAGKL 921


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,727,841
Number of Sequences: 53049
Number of extensions: 466842
Number of successful extensions: 1356
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1353
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2441585082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)