Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0785
         (599 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68303-12|CAA92644.2|  969|Caenorhabditis elegans Hypothetical p...    30   1.1  
Z68302-9|CAA92636.2|  969|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z48795-5|CAA88729.1|  337|Caenorhabditis elegans Hypothetical pr...    30   1.1  
AF025452-1|AAB70944.1|  411|Caenorhabditis elegans C-type lectin...    30   1.1  
AF077541-10|AAM54170.2|  179|Caenorhabditis elegans Cysteinyl tr...    30   1.5  
Z83218-4|CAB05690.2|  706|Caenorhabditis elegans Hypothetical pr...    28   4.4  
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en...    28   4.4  
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET...    28   4.4  
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET...    28   4.4  
AL161712-16|CAC35892.1|  329|Caenorhabditis elegans Hypothetical...    28   5.9  
AF025450-9|AAB70938.2|  409|Caenorhabditis elegans C-type lectin...    27   7.7  

>Z68303-12|CAA92644.2|  969|Caenorhabditis elegans Hypothetical
           protein ZK792.1a protein.
          Length = 969

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +2

Query: 374 FRKIYMRACNPADNI-VRGSEGAVDEDAWLLHGVLVITRHGDRGPLH 511
           + K+ +  C   +N  ++GSEG  D     L  +L   RHGDR  L+
Sbjct: 549 YEKMVIEHCQFVENRDLQGSEGRTDHPNATLISILAAVRHGDRFGLY 595


>Z68302-9|CAA92636.2|  969|Caenorhabditis elegans Hypothetical
           protein ZK792.1a protein.
          Length = 969

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +2

Query: 374 FRKIYMRACNPADNI-VRGSEGAVDEDAWLLHGVLVITRHGDRGPLH 511
           + K+ +  C   +N  ++GSEG  D     L  +L   RHGDR  L+
Sbjct: 549 YEKMVIEHCQFVENRDLQGSEGRTDHPNATLISILAAVRHGDRFGLY 595


>Z48795-5|CAA88729.1|  337|Caenorhabditis elegans Hypothetical
           protein R05H5.6 protein.
          Length = 337

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -2

Query: 475 EHTMQQPSILIYCTF*TSHYIISWIASSHIYLSKLNITF*YVLIFI 338
           +    QPSI  +    TS Y ++W+  S + ++ +N+ F Y L+ I
Sbjct: 160 DEKFDQPSISYFMVPDTSGYKMNWLCYSLLAINSVNLVFNYFLVKI 205


>AF025452-1|AAB70944.1|  411|Caenorhabditis elegans C-type lectin
           protein 2 protein.
          Length = 411

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = -3

Query: 156 TAHSHYCL*NFNVYCISF*HYGKGRYSFLKTQIFCCEE 43
           T H   C  N+N YC +F H  +  YSF   Q  C EE
Sbjct: 148 TTHEDSCYYNYNNYCYTF-H--RDLYSFTTAQTICEEE 182


>AF077541-10|AAM54170.2|  179|Caenorhabditis elegans Cysteinyl trna
           synthetase protein2, isoform a protein.
          Length = 179

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +3

Query: 6   THIFVYRVCFICFL-RNRKFVSSKMSTYLFHSAK 104
           TH  + +  FI +L ++++F S  +STY+FH  K
Sbjct: 128 THSKLLQTTFIVYLHKSKRFSSKTISTYMFHQIK 161


>Z83218-4|CAB05690.2|  706|Caenorhabditis elegans Hypothetical
           protein C31A11.7 protein.
          Length = 706

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
 Frame = -3

Query: 462 NNQASSSTAPSEPLTILSAGLQALIYIFLNLTSLF--DMY*SLYIFLGMLISSLTDMYLY 289
           NN   SSTA   P   L+   Q  I+  + L  L+   +  S  I +GM I SL  +Y+ 
Sbjct: 413 NNMGDSSTACYAPSWYLAVDTQLYIFAPIILVGLYYSAIIGSSLIAVGM-IGSLVTVYIL 471

Query: 288 ITVMRTKIQRLSRGNNKKLCD 226
            ++          GN   L D
Sbjct: 472 YSIYDLPADFFGNGNTNLLYD 492


>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
           protein precursor protein.
          Length = 2272

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -3

Query: 255 SRGNNKKLCDEMKASSFHSLFCFYL*VQAAFLATAHSH 142
           S+ N  + CDE + S +H   CF L  +A F      H
Sbjct: 648 SKDNASQKCDECQQSGWHMASCFKLKNRACFRCNEMGH 685


>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
           protein, isoforma protein.
          Length = 2175

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -3

Query: 255 SRGNNKKLCDEMKASSFHSLFCFYL*VQAAFLATAHSH 142
           S+ N  + CDE + S +H   CF L  +A F      H
Sbjct: 551 SKDNASQKCDECQQSGWHMASCFKLKNRACFRCNEMGH 588


>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
           protein, isoformb protein.
          Length = 2186

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -3

Query: 255 SRGNNKKLCDEMKASSFHSLFCFYL*VQAAFLATAHSH 142
           S+ N  + CDE + S +H   CF L  +A F      H
Sbjct: 562 SKDNASQKCDECQQSGWHMASCFKLKNRACFRCNEMGH 599


>AL161712-16|CAC35892.1|  329|Caenorhabditis elegans Hypothetical
           protein Y66D12A.21 protein.
          Length = 329

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 17/68 (25%), Positives = 30/68 (44%)
 Frame = -3

Query: 342 LYIFLGMLISSLTDMYLYITVMRTKIQRLSRGNNKKLCDEMKASSFHSLFCFYL*VQAAF 163
           LYIF G    S+      I++     +R S+   KKL +  K+   H  F  +  +   F
Sbjct: 253 LYIFSGKFEFSVPKSSRKISIFLFFFRRKSKNREKKLKNHRKSIEIHFFFQKFFQIFIFF 312

Query: 162 LATAHSHY 139
              +H+++
Sbjct: 313 TFDSHTNF 320


>AF025450-9|AAB70938.2|  409|Caenorhabditis elegans C-type lectin
           protein 3 protein.
          Length = 409

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -3

Query: 156 TAHSHYCL*NFNVYCISF*HYGKGRYSFLKTQIFCCEE 43
           + H   C  N+N YC +F H    + SF   Q  C EE
Sbjct: 146 STHEDPCYYNYNNYCYTFSH---NQSSFTTAQAICEEE 180


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,933,269
Number of Sequences: 27780
Number of extensions: 252063
Number of successful extensions: 778
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)