Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0785
         (599 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.0  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   7.0  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   7.0  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   7.0  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   9.2  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   9.2  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   9.2  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    21   9.2  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   9.2  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 275 LITVMYKYMSVSEEISIPKKIYKDQYISKSDVK 373
           +IT M      SE+  IP+ +Y   Y S  D+K
Sbjct: 789 IITHMILNYVGSEDSVIPRILYLTWYSSNGDIK 821


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 148 LTLLLIEFQCILYFFL 101
           L  +LI F C+L F+L
Sbjct: 242 LPTVLISFLCVLVFYL 257


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -2

Query: 493 SMPGDHEHTMQQPSILIYCTF*TSHYIISWIASSH 389
           S PG H HTM      I+    T H+  S  A+ H
Sbjct: 410 STPGPHHHTMGHGHSHIHA---TPHHHHSHAATPH 441


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -2

Query: 487 PGDHEHTMQQPSILIY 440
           P    H +QQPSI  Y
Sbjct: 443 PSTSSHILQQPSIRTY 458


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = -1

Query: 158 LLPTHITAYRISMYIVFLFSTMEKVGTHF*RHK 60
           L+P+ + +Y  SM     +   +K+ ++F R+K
Sbjct: 403 LIPSALQSYSTSMRDPAFYMLYQKILSYFLRYK 435


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +3

Query: 18  VYRVCFICF 44
           V+ VCF+CF
Sbjct: 411 VFPVCFVCF 419


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +3

Query: 18  VYRVCFICF 44
           V+ VCF+CF
Sbjct: 411 VFPVCFVCF 419


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -3

Query: 336 IFLGMLISSLTDMYLYITVMRTKIQRLS 253
           +FL +LI +L   ++Y  + R  +  L+
Sbjct: 14  VFLSLLIPALILYFIYFRISRRHLLELA 41


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +3

Query: 18  VYRVCFICF 44
           V+ VCF+CF
Sbjct: 349 VFPVCFVCF 357


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,031
Number of Sequences: 438
Number of extensions: 3173
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)