Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0784
         (675 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos...    55   8e-09
SPBC2G5.04c |||COPII-coated vesicle component Erv41 |Schizosacch...    32   0.087
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni...    28   1.1  
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|...    28   1.4  
SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch...    26   4.3  
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc...    26   4.3  
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    25   7.6  
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    25   7.6  
SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator related|Schiz...    25   7.6  
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce...    25   10.0 
SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomy...    25   10.0 
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    25   10.0 

>SPBC215.03c |csn1||COP9/signalosome complex subunit
           Csn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 422

 Score = 55.2 bits (127), Expect = 8e-09
 Identities = 25/52 (48%), Positives = 33/52 (63%)
 Frame = +1

Query: 520 LEKLDTDLKNYKTNSIKESIRRGHDDLGDHYLDCGDLTSALKCYSRARDYCT 675
           LE+L  +LK YK N I+ESIR    DL   + D G   SAL+ Y++ R+YCT
Sbjct: 92  LEQLRRELKAYKNNLIRESIRAAQLDLASFFADVGQFDSALRSYAKVREYCT 143


>SPBC2G5.04c |||COPII-coated vesicle component Erv41
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 333

 Score = 31.9 bits (69), Expect = 0.087
 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 7/66 (10%)
 Frame = -3

Query: 343 KASNRNDGQWSATNMSL*SFAKPVYDAAYVPNPRWGFQRRSIPSHCF---HYL----LGE 185
           K +N   G  +A  +        V    ++  P WG+ R +IP H     HY+     GE
Sbjct: 140 KKNNAEPGSGTACRIYGQLVVNRVNGQLHITAPGWGYGRSNIPFHSLNFTHYIEELSFGE 199

Query: 184 YQPALV 167
           Y PALV
Sbjct: 200 YYPALV 205


>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
           Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 737

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -2

Query: 410 FFMQCVIQIYVICGHDIGYGHFQSFQSQ*RTVVCYKHEPIKFCKTSI 270
           F  +CV++ Y     + G   F+SF       + ++HE I+FCK ++
Sbjct: 140 FLRKCVVE-YEQFSFEQGVQFFKSFLQYRAPSMDFQHEGIEFCKINV 185


>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 584

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 526 KLDTDLKNYKTNSIKESIRRGHDDLGDHYLD 618
           K+D+D K +K  ++++ IR  H D+G    D
Sbjct: 122 KVDSDEKKHKHKNVRDYIRFKHVDIGGRIFD 152


>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 794

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
 Frame = +1

Query: 133 NPPIMFEMNTAEPMQVDIPPEDNENNET---ECYVVENPTLD 249
           +PP   E+     +    PP D E NET   E  ++E P+ D
Sbjct: 14  DPPSYEEVALHSALNNSAPPNDGEQNETSMEEMEIIEPPSED 55


>SPCC188.06c |srp54||signal recognition particle subunit
           Srp54|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 522

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 40  NTKRVVKLRFSDELVFIVDSKFRVFSLKK 126
           N KR+V+    DEL  +VD K   F+ KK
Sbjct: 70  NGKRIVQKAVFDELCSLVDPKVDAFTPKK 98


>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 177 LHWFSCVHFEHYWRV 133
           + WFSC HF   W+V
Sbjct: 345 MSWFSCNHFYPEWKV 359


>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +1

Query: 496 QKQKTAIKLEKLDTDLKNYKTNSIKESIRRGH 591
           ++ KT+IKL    +    Y  N ++    RGH
Sbjct: 383 EESKTSIKLRGASSSFHRYAKNLVESVFTRGH 414


>SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator
           related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 265

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 8/18 (44%), Positives = 16/18 (88%)
 Frame = -2

Query: 74  SENRNFTTLLVFFNKYLY 21
           +E++N +T L+F+NK++Y
Sbjct: 56  NESQNVSTRLIFWNKWIY 73


>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 983

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 484 FG*NQKQKTAIKLEKLDTDLKNYKTNSIKESIRRG 588
           FG + +    ++ + L TD+     NS+KE I++G
Sbjct: 748 FGPDDRGTNILRDDTLSTDVDKNVLNSVKEYIKQG 782


>SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 276

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -3

Query: 316 WSATNMSL*SFAKPVYDAAYVPNPRWGFQR 227
           W A   SL    +P  D   + +P+W  +R
Sbjct: 89  WKAVEQSLRRTGRPKLDVVLIHSPKWPVRR 118


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 496  QKQKTAIKLEKLDTDLKNYKTNSIKE 573
            QK+K  ++L+  D DLK Y  ++ K+
Sbjct: 1942 QKEKKDLELKLFDLDLKTYPISTSKD 1967


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,735,921
Number of Sequences: 5004
Number of extensions: 56793
Number of successful extensions: 165
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)