Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0784
         (675 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132895-1|CAC14399.1|  601|Caenorhabditis elegans Hypothetical ...    51   9e-07
U53153-7|AAC69037.1| 1280|Caenorhabditis elegans Hypothetical pr...    29   4.0  
AL132860-3|CAB60514.2|  342|Caenorhabditis elegans Hypothetical ...    29   4.0  
AL032660-2|CAA21751.1|  690|Caenorhabditis elegans Hypothetical ...    28   5.3  
L16621-6|AAA28229.1|   67|Caenorhabditis elegans Hypothetical pr...    28   7.0  
AC024770-1|AAF59482.1|  261|Caenorhabditis elegans Hypothetical ...    27   9.2  

>AL132895-1|CAC14399.1|  601|Caenorhabditis elegans Hypothetical
           protein Y59A8A.1 protein.
          Length = 601

 Score = 50.8 bits (116), Expect = 9e-07
 Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
 Frame = +1

Query: 523 EKLDTDLKNYKTNSIKESIRRGHDDLGDHYLDCGDLTSALKCYSRA-RDYCT 675
           ++L  + K +K   +KES RR  +DL  HY+  G +  A++ YSR  RDYCT
Sbjct: 179 DQLQAEYKRHKDEGVKESTRRAMEDLFQHYMMAGKIDEAIRLYSRGIRDYCT 230



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
 Frame = +3

Query: 261 AASYTGFAKLYRLMFVADHCPSLRLEALKMAISYVMT-TYNVNLYHTLHKKLSEAVASAG 437
           A SY   A   R  F+A HCP LR +A    I+Y+   T ++  Y     +L   +A   
Sbjct: 90  ACSYDSNAFFLRARFIARHCPILRADAYISLINYLKEHTTDITHYVAFFNELESELARKE 149

Query: 438 LPDIAGSQDIPVLDTIWVE 494
             +   +  IP+ D  W+E
Sbjct: 150 FKNRQLNFQIPLRDQKWIE 168


>U53153-7|AAC69037.1| 1280|Caenorhabditis elegans Hypothetical protein
            T19A5.1 protein.
          Length = 1280

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -3

Query: 193  LGEYQPALVQLCSFRTLLEGFRPFLMKIREIYC 95
            +G+YQ AL    S  +L   F+P   KIR IYC
Sbjct: 1240 IGDYQRALNFYYSTLSLQANFQPAKDKIRTIYC 1272


>AL132860-3|CAB60514.2|  342|Caenorhabditis elegans Hypothetical
           protein Y56A3A.4 protein.
          Length = 342

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +1

Query: 133 NPPIMFEMNTAEPMQVDIPPEDNEN-NETE 219
           NP I   ++T  PMQ  IPP+ ++N NE +
Sbjct: 21  NPQIAAALSTNSPMQQGIPPQGHQNPNEQQ 50


>AL032660-2|CAA21751.1|  690|Caenorhabditis elegans Hypothetical
           protein Y70G10A.3 protein.
          Length = 690

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 18/43 (41%), Positives = 22/43 (51%)
 Frame = -2

Query: 200 LSSGGISTCIGSAVFISNIIGGF*AFFNENTRNLLSTMKTNSS 72
           LS+     CI   +F S II GF AF  +    LLST  T +S
Sbjct: 329 LSNPTFLVCIFVGIFESIIINGFAAFMPKILETLLSTNPTLAS 371


>L16621-6|AAA28229.1|   67|Caenorhabditis elegans Hypothetical
           protein ZK688.4 protein.
          Length = 67

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 21/60 (35%), Positives = 27/60 (45%)
 Frame = -2

Query: 227 T*HSVSLFSLSSGGISTCIGSAVFISNIIGGF*AFFNENTRNLLSTMKTNSSENRNFTTL 48
           T HSVS F + S  I   + SAV ++        FF E  R   ST       N+N TT+
Sbjct: 9   TVHSVSNFYIFSSTI--LLTSAVILAIFFFFGDGFFREKYRREFSTNSKEKDGNKNLTTV 66


>AC024770-1|AAF59482.1|  261|Caenorhabditis elegans Hypothetical
           protein Y39H10A.4 protein.
          Length = 261

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 94  DSKFRVFSLKKA*NPPIMFEMNTAEPMQVDIPP 192
           D +FRV  + ++ NP  +F++    P+ V +PP
Sbjct: 100 DYQFRVIIVIRSSNPAAVFDIIRPRPIPVQLPP 132


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,968,893
Number of Sequences: 27780
Number of extensions: 316391
Number of successful extensions: 859
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)