Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0783
         (746 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc...    29   0.53 
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S...    28   1.6  
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual      27   2.1  
SPAC17C9.14 |||Pex19 protein family|Schizosaccharomyces pombe|ch...    26   6.6  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   8.7  
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc...    25   8.7  

>SPAC6B12.05c |||chromatin remodeling complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 295

 Score = 29.5 bits (63), Expect = 0.53
 Identities = 13/36 (36%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = +3

Query: 618 KRLNDDQMKCNLNNIDTIN-VIKQQAHTGNLRRGKA 722
           +R N  + +     ++TIN ++K+Q++TG  RRG+A
Sbjct: 209 RRKNQSERRLEEEKMETINRLLKRQSNTGKPRRGRA 244


>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
           Klp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 20/46 (43%), Positives = 24/46 (52%)
 Frame = +2

Query: 116 SVATSETKKNTLCTI*VIKIVIMFESDDFDEVLSQFDIPETIPQKK 253
           S+A S T  NT CT  + KIV + +    D VL  FD PE  P  K
Sbjct: 38  SLAVSNTSSNTFCTNGIRKIVRVLD----DNVLI-FDPPEENPLAK 78


>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/42 (30%), Positives = 26/42 (61%)
 Frame = +3

Query: 510 LEETKNESICHLELLSQDIDFTQNNLRRDLFDSPLWKRLNDD 635
           +E  K +S+ H E  +QD   T   ++RD+ +SP+ K+ +++
Sbjct: 135 IEYAKTKSLFH-EREAQDAIETMKKMKRDVKNSPIMKKSHEE 175


>SPAC17C9.14 |||Pex19 protein family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 232

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = +2

Query: 194 DDFDEVLSQFDIPETIPQKKDK*MSKNRQ 280
           DD D++L   D+P     ++ K + +++Q
Sbjct: 28  DDLDDILDDLDVPSAFKNEEKKNIDEHKQ 56


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +3

Query: 510  LEETKNESICHLELLSQDIDFTQNNLRRDLFDSPLWKRLNDDQ-MKCNLNNIDTINVIKQ 686
            +E+ KNES   LE +   +   +NN+R  L  S      NDD  +  N+ +     V+K+
Sbjct: 1123 MEKQKNESKAALEQMKNYVTNIENNIRAKLLPS----AANDDAWLSQNVVDESVTRVVKE 1178


>SPBC336.12c |cdc10||MBF transcription factor complex subunit
           Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +3

Query: 510 LEETKNESICHLELLSQDIDFTQNNLRRDLFDSPLWKRLNDDQMKC 647
           + E  N+++   EL  Q   + +N  R +   + LW+R ++ + KC
Sbjct: 670 VNENNNKNLSIAELKFQVAAYERNEARLNELANKLWQRNSNIKSKC 715


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,843,451
Number of Sequences: 5004
Number of extensions: 58244
Number of successful extensions: 173
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)