Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0783
         (746 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57115| Best HMM Match : HALZ (HMM E-Value=7.6)                      31   1.3  
SB_56062| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_23193| Best HMM Match : Lipoprotein_17 (HMM E-Value=2.3)            31   1.3  
SB_15149| Best HMM Match : HALZ (HMM E-Value=7.6)                      31   1.3  
SB_35420| Best HMM Match : Not3 (HMM E-Value=6)                        29   3.0  
SB_22054| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_51986| Best HMM Match : HLH (HMM E-Value=0.15)                      28   7.0  
SB_53781| Best HMM Match : Keratin_B2 (HMM E-Value=0.16)               28   9.2  
SB_17129| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-07)                 28   9.2  

>SB_57115| Best HMM Match : HALZ (HMM E-Value=7.6)
          Length = 209

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = -1

Query: 326 FFLGGDLKF-LFNIQFSACSSTFICLF 249
           FFLGGDLKF L ++  S  +S + CL+
Sbjct: 56  FFLGGDLKFLLLSMGLSGATSDYACLW 82


>SB_56062| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 728

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = -1

Query: 326 FFLGGDLKF-LFNIQFSACSSTFICLF 249
           FFLGGDLKF L ++  S  +S + CL+
Sbjct: 456 FFLGGDLKFLLLSMGLSGATSDYACLW 482


>SB_23193| Best HMM Match : Lipoprotein_17 (HMM E-Value=2.3)
          Length = 711

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = -1

Query: 326 FFLGGDLKF-LFNIQFSACSSTFICLF 249
           FFLGGDLKF L ++  S  +S + CL+
Sbjct: 456 FFLGGDLKFLLLSMGLSGATSDYACLW 482


>SB_15149| Best HMM Match : HALZ (HMM E-Value=7.6)
          Length = 328

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = -1

Query: 326 FFLGGDLKF-LFNIQFSACSSTFICLF 249
           FFLGGDLKF L ++  S  +S + CL+
Sbjct: 56  FFLGGDLKFLLLSMGLSGATSDYACLW 82


>SB_35420| Best HMM Match : Not3 (HMM E-Value=6)
          Length = 392

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 20/81 (24%), Positives = 40/81 (49%)
 Frame = +2

Query: 239 IPQKKDK*MSKNRQKIVY*TKTLNPHPKKNYAN*QKAITRNQYLSSKHAMYQQCPPMRHS 418
           +P  K+K  S N QK+   TKT    PK N+ +  K + +     S  A +QQ   +++ 
Sbjct: 142 VPNAKNK--SANPQKLGTKTKTEPSPPKVNFIDKNKEVGKRTKGGSYAAKFQQKVKLKYD 199

Query: 419 QNIQKEKL*SHILIKVENESF 481
           ++ +     ++ L++  +E +
Sbjct: 200 KDFKGHSTTTNNLLEETSEQY 220


>SB_22054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 280

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 17/66 (25%), Positives = 31/66 (46%)
 Frame = -2

Query: 571 KSISCDNSSK*QILSFLVSSKFYLVILLVLETFVFYFDQNVTL*FFFLNVLRMPHWWTLL 392
           +S+    +S   I+S  +   FY+ I  VL+  VFYF     +    L+ +   + W ++
Sbjct: 61  RSLFTYKNSLTMIISIWIICIFYVCIFAVLQGPVFYFHAGKLICHIRLHDMAYKNTWNII 120

Query: 391 IHCMFA 374
              +FA
Sbjct: 121 TGLLFA 126


>SB_51986| Best HMM Match : HLH (HMM E-Value=0.15)
          Length = 2110

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 507 NLEETKNESICHLELLSQDIDFTQNNLRRDLFDSPLWK 620
           N++E ++E I  +  L   +DF   N+ + L   PLW+
Sbjct: 205 NVDEIEDEPINEISSL---VDFVDENIEKSLLKDPLWQ 239


>SB_53781| Best HMM Match : Keratin_B2 (HMM E-Value=0.16)
          Length = 561

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 16/59 (27%), Positives = 23/59 (38%)
 Frame = +1

Query: 241 SAKKRQMNVEEQAENCILNKNFKSPPKKKLCKLTESDNTKSVSQQQTCNVSTVSTNEAF 417
           SA K QM V +    C ++        K +C+    + T  +S  Q C       NE F
Sbjct: 355 SAGKMQMTVHQDIRQCAVSYQCTPQVYKLMCEGMAQNGTTVLSCAQQCCEGNQCNNETF 413


>SB_17129| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-07)
          Length = 350

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = -2

Query: 355 CYR-FLLICIIFFWVGI*SFCLIYNFLPVL-RHSFVFFLRNSFRNIKLR*YLIEII 194
           CY  F  I I F W+ + S  +I  F+P+L  +SF+ F+  S R    R  L ++I
Sbjct: 212 CYLPFSAILIHFIWIEMESSPIIDYFVPLLYANSFINFVLYSLRMPDFRRQLYKLI 267


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,678,630
Number of Sequences: 59808
Number of extensions: 362214
Number of successful extensions: 823
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)