Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0783
         (746 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   5.3  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    21   9.3  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   9.3  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   9.3  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 121 CYF*NQEKYTLHNISN*NCY 180
           C+F N +K T H +S  N Y
Sbjct: 92  CFFKNAKKVTFHEMSIPNHY 111


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 632 IIQSLPQWRIK*ISSQIILSEINIL 558
           I++  P W  K ISS II   +N++
Sbjct: 40  ILKPKPLWTGKQISSLIIPGNVNMI 64


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +1

Query: 325 KLCKLTESDNTKSVSQQQTCNVSTVSTN 408
           ++C LT +    SV  +  CN+ ++S +
Sbjct: 522 EICLLTNARRVASVRAETYCNLFSLSVD 549


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +1

Query: 325 KLCKLTESDNTKSVSQQQTCNVSTVSTN 408
           ++C LT +    SV  +  CN+ ++S +
Sbjct: 490 EICLLTNARRVASVRAETYCNLFSLSVD 517


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,219
Number of Sequences: 438
Number of extensions: 3877
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)