Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0782
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 171 6e-44
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 126 3e-30
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 81 2e-16
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo... 76 4e-15
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 39 7e-04
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 37 0.003
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 36 0.005
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit... 36 0.007
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 36 0.007
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 34 0.021
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 33 0.027
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 31 0.11
SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination ... 30 0.34
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 29 0.59
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 29 0.77
SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual 28 1.0
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 27 1.8
SPAC23H4.07c |srp102||signal recognition particle receptor beta ... 27 2.4
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 27 2.4
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 27 3.1
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 27 3.1
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 27 3.1
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc... 26 4.1
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 26 4.1
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 26 4.1
SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa... 26 5.5
SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||... 26 5.5
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 26 5.5
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 26 5.5
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 25 7.2
SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 25 7.2
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos... 25 9.5
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 25 9.5
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 25 9.5
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 9.5
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|... 25 9.5
SPAC30C2.06c |dml1||mitochondrial genome maintenance protein |Sc... 25 9.5
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa... 25 9.5
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 171 bits (417), Expect = 6e-44
Identities = 78/85 (91%), Positives = 82/85 (96%)
Frame = +3
Query: 255 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLL 434
FTVWDVGGQDKIRPLWRHYFQNTQG+IFVVDSNDRERI EA EEL RML+EDELRDA+LL
Sbjct: 63 FTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDELRDALLL 122
Query: 435 IFANKQDLPNAMNAAEITDKLGLHS 509
+FANKQDLPNAMNAAEITDKLGLHS
Sbjct: 123 VFANKQDLPNAMNAAEITDKLGLHS 147
Score = 110 bits (265), Expect = 1e-25
Identities = 53/62 (85%), Positives = 57/62 (91%)
Frame = +1
Query: 70 MGNMFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 249
MG + LF+ LFGK+EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY+N
Sbjct: 1 MGLSISKLFQSLFGKREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYRN 60
Query: 250 IS 255
IS
Sbjct: 61 IS 62
Score = 65.7 bits (153), Expect = 6e-12
Identities = 27/32 (84%), Positives = 29/32 (90%)
Frame = +2
Query: 509 LRNRNWYIQATCATSGDGLYEGLDWLSNQLKN 604
LR+R WYIQATCATSGDGLYEGL+WLS LKN
Sbjct: 148 LRHRQWYIQATCATSGDGLYEGLEWLSTNLKN 179
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 126 bits (304), Expect = 3e-30
Identities = 57/83 (68%), Positives = 68/83 (81%)
Frame = +3
Query: 255 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLL 434
F VWDVGGQDKIRPLWRHYF T+GLIFVVDS D RI EAR+EL R++S+ E+RD +LL
Sbjct: 67 FNVWDVGGQDKIRPLWRHYFTGTKGLIFVVDSADSNRISEARQELHRIISDREMRDCLLL 126
Query: 435 IFANKQDLPNAMNAAEITDKLGL 503
+ ANKQDLP A++ A+ITD L L
Sbjct: 127 VLANKQDLPGALSPAQITDVLQL 149
Score = 90.6 bits (215), Expect = 2e-19
Identities = 43/57 (75%), Positives = 47/57 (82%)
Frame = +1
Query: 82 FANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI 252
F+ F LF KEMRILM+GLDAAGKTTILYKLKL + V TIPT+GFNVETV YKNI
Sbjct: 9 FSKPFSRLFSNKEMRILMLGLDAAGKTTILYKLKLNQSVVTIPTVGFNVETVTYKNI 65
Score = 44.4 bits (100), Expect = 1e-05
Identities = 18/31 (58%), Positives = 22/31 (70%)
Frame = +2
Query: 509 LRNRNWYIQATCATSGDGLYEGLDWLSNQLK 601
L++R W +Q TCA +GDGL EGL WLS K
Sbjct: 152 LKDRLWNVQPTCALTGDGLLEGLAWLSQNAK 182
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 80.6 bits (190), Expect = 2e-16
Identities = 34/83 (40%), Positives = 56/83 (67%)
Frame = +3
Query: 255 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLL 434
FT+WD+GGQ +R W++YF++T+ +I+VVDS D R+ E R L +L E++L +L
Sbjct: 62 FTIWDIGGQKTLRNFWKNYFESTEAIIWVVDSLDDLRLEECRNTLQELLVEEKLLFTSIL 121
Query: 435 IFANKQDLPNAMNAAEITDKLGL 503
+ ANK D+ A+++ EI+ L +
Sbjct: 122 VLANKSDVSGALSSEEISKILNI 144
Score = 45.6 bits (103), Expect = 6e-06
Identities = 23/48 (47%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Frame = +1
Query: 112 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEYKNI 252
++E+R+L++GLD AGKTTIL K L E V + PT GF + T+E + +
Sbjct: 14 EREVRVLLLGLDNAGKTTIL-KCLLNEDVNEVSPTFGFQIRTLEVEGL 60
Score = 25.8 bits (54), Expect = 5.5
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +2
Query: 512 RNRNWYIQATCATSGDGLYEGLDWLSNQLK 601
++ +W I + A +G + + + WL+N LK
Sbjct: 148 KSSHWRIFSVSALTGLNIKDAISWLANDLK 177
>SPBC31F10.06c |sar1||ADP-ribosylation factor
Sar1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 190
Score = 76.2 bits (179), Expect = 4e-15
Identities = 38/94 (40%), Positives = 55/94 (58%)
Frame = +3
Query: 255 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLL 434
FT +D+GG + R LWR YF G++++VD D ER+ E++ EL +L+ +EL L
Sbjct: 66 FTTFDLGGHQQARRLWRDYFPEVNGIVYLVDCCDFERLSESKAELDALLAMEELARVPFL 125
Query: 435 IFANKQDLPNAMNAAEITDKLGLHSCATVTGTSK 536
I NK D P A++ E+ LGL+ T G SK
Sbjct: 126 ILGNKIDAPGAISEDELKAALGLYQ-TTGKGVSK 158
Score = 35.1 bits (77), Expect = 0.009
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +1
Query: 115 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI 252
K ++L +GLD AGKTT+L+ LK + PT+ E + N+
Sbjct: 19 KHAKMLFLGLDNAGKTTLLHMLKNDRLAVMQPTLHPTSEELAIGNV 64
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 38.7 bits (86), Expect = 7e-04
Identities = 16/66 (24%), Positives = 31/66 (46%)
Frame = +3
Query: 261 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLLIF 440
+WD GQ++ R + Y++ G+I V D D++ ++ L + + L+
Sbjct: 61 IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQE-IDRYAVEGVNRLLV 119
Query: 441 ANKQDL 458
NK D+
Sbjct: 120 GNKSDM 125
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 36.7 bits (81), Expect = 0.003
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = +3
Query: 261 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLLIF 440
+WD GQ+K R + R+Y++ G + V D +++ E L + + V+L
Sbjct: 66 IWDTAGQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEELSSWLSDIRAMAPSTICVVLA- 124
Query: 441 ANKQDLPN 464
+K DL N
Sbjct: 125 GSKSDLQN 132
>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 35.9 bits (79), Expect = 0.005
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 10/83 (12%)
Frame = +3
Query: 240 IQKH*FTVWDVGGQDKIRPLWRHYFQNTQGLIF----------VVDSNDRERIGEAREEL 389
+ +H + +DVGGQ R W H F+N L+F +V+ N ++ EA
Sbjct: 231 LNRHHYRFFDVGGQRSERRKWIHCFENVTALLFLVSLAGYDQCLVEDNSGNQMQEALLLW 290
Query: 390 MRMLSEDELRDAVLLIFANKQDL 458
+ + ++ +++F NK DL
Sbjct: 291 DSICNSSWFSESAMILFLNKLDL 313
Score = 30.7 bits (66), Expect = 0.19
Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +1
Query: 109 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN-ISLLCGMLEAKT 285
G ++++L++G +GKTTI+ +++L + + ++N IS LC +LEA
Sbjct: 71 GGNDIKVLLLGAGDSGKTTIMKQMRLLYSPGFSQVVRKQYRVMIFENIISSLCLLLEAMD 130
Query: 286 KSD 294
S+
Sbjct: 131 NSN 133
>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 354
Score = 35.5 bits (78), Expect = 0.007
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +3
Query: 261 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER--IGEAREELMRMLSEDELRDAVL 431
++DVGGQ R W + F+N +IF V ND ++ A E R++ L D+++
Sbjct: 196 MFDVGGQRTERRKWIYCFENVNSIIFCVSLNDYDKKLYERAAPERNRLVESISLFDSII 254
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 35.5 bits (78), Expect = 0.007
Identities = 20/77 (25%), Positives = 33/77 (42%)
Frame = +3
Query: 261 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLLIF 440
+WD GQ++ + L Y++N I V D + +A+ ++ L V+ +
Sbjct: 68 IWDTAGQERYKSLAPMYYRNANCAIVVYDITQAASLEKAK-SWIKELQRQAPEGIVIALA 126
Query: 441 ANKQDLPNAMNAAEITD 491
NK DL A E D
Sbjct: 127 GNKLDLAQERRAVEKAD 143
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 33.9 bits (74), Expect = 0.021
Identities = 17/66 (25%), Positives = 30/66 (45%)
Frame = +3
Query: 261 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLLIF 440
+WD GQ++ R + Y++ G + V D + L + L E + V+++
Sbjct: 63 IWDTAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWL-KELREHADSNIVIMLV 121
Query: 441 ANKQDL 458
NK DL
Sbjct: 122 GNKTDL 127
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 33.5 bits (73), Expect = 0.027
Identities = 10/40 (25%), Positives = 21/40 (52%)
Frame = +3
Query: 261 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAR 380
+WD GQ++ R + Y++ G++ + D D++ R
Sbjct: 62 IWDTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVR 101
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 31.5 bits (68), Expect = 0.11
Identities = 16/66 (24%), Positives = 31/66 (46%)
Frame = +3
Query: 261 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLLIF 440
+WD GQ++ R L Y +++ I V D + E+ + + + D ++++
Sbjct: 64 LWDTAGQERFRSLIPSYIRDSSVAIIVYDITNHNSFVNT-EKWIEDVRAERGDDVIIVLV 122
Query: 441 ANKQDL 458
NK DL
Sbjct: 123 GNKTDL 128
>SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination
repair protein Sfr1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 29.9 bits (64), Expect = 0.34
Identities = 23/94 (24%), Positives = 43/94 (45%)
Frame = +3
Query: 372 EAREELMRMLSEDELRDAVLLIFANKQDLPNAMNAAEITDKLGLHSCATVTGTSKRHAPL 551
+ +E+L LSE +LRD+ + ++ P N+ +D LG + A
Sbjct: 16 QCKEDLKVSLSESDLRDSQGQL--GIENPPKCNNSGNHSDNLGFIEQSETVHPENEKALT 73
Query: 552 PETDCTRVSTGSPISSRTPTANRMFANSQTNLII 653
P+ T++ T PI+ TP + + A N+++
Sbjct: 74 PDLRDTKIHTSLPIT--TPFSKKR-AREAKNILL 104
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 29.1 bits (62), Expect = 0.59
Identities = 21/109 (19%), Positives = 47/109 (43%), Gaps = 3/109 (2%)
Frame = +3
Query: 261 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR---ERIGEAREELMRMLSEDELRDAVL 431
+WD GQ++ + L +++ + V + N+ + + R+E + S+DE +
Sbjct: 61 LWDTAGQERFQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQEFLYQTSQDECAFPFI 120
Query: 432 LIFANKQDLPNAMNAAEITDKLGLHSCATVTGTSKRHAPLPETDCTRVS 578
++ N+ D + A + L C + G++ H + T V+
Sbjct: 121 IV-GNQIDKDASKRAVSL--HRALDYCKSKHGSNMIHFEASAKENTNVT 166
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 28.7 bits (61), Expect = 0.77
Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Frame = +3
Query: 261 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR---ERIGEAREELMRMLSEDELRDAVL 431
+WD GQ++ + L +++ + V D N+ E + R+E + S
Sbjct: 61 LWDTAGQERFQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQASPSNPETFPF 120
Query: 432 LIFANKQDL 458
++ NK D+
Sbjct: 121 ILLGNKVDV 129
>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
Length = 324
Score = 28.3 bits (60), Expect = 1.0
Identities = 21/72 (29%), Positives = 37/72 (51%)
Frame = -2
Query: 260 SKLMFLYSTVSTLKPIVGIVVTISPNLSLYRIVVLPAASKPTINILISFLPKRPLNKFAN 81
+ + F T T++P V + ++S N +L VVL + + +IN+ L ++ FA
Sbjct: 183 ANVFFHEYTTETIRPHVRLHNSLSTNAALSASVVLASRLEKSINVFFFIL--FAVHWFA- 239
Query: 80 IFPILNYYEYNF 45
+FPI Y + F
Sbjct: 240 LFPIFRKYIHVF 251
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 27.5 bits (58), Expect = 1.8
Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
Frame = +3
Query: 354 DRERIGEAREELMRMLSEDELRDAVL----LIFANKQDLPNAMNAAEITDKLGLHSCATV 521
D E+ + REE +R+L E +DA + + +DL + ++ A+++ K +S AT
Sbjct: 405 DEEKKKKEREEQVRLLQESADKDAEMNEASTATSENEDLKDDLSLADLSSKKTANSQATE 464
Query: 522 TGTSKRHAPLPETDCTRVSTGSPISSRTPTANRMFANSQTN 644
+ A + R S SR ++ +S+ N
Sbjct: 465 NNNTPSKAKVKAESKVR-SKAKSDKSRAKLSSDTNKDSEKN 504
>SPAC23H4.07c |srp102||signal recognition particle receptor beta
subunit Srp102 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 27.1 bits (57), Expect = 2.4
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +1
Query: 112 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY 243
KK + ++G +GKT++ +L E TT+P+I N +Y
Sbjct: 35 KKLPAVFLIGPSDSGKTSLFCELIYKEKKTTVPSIEPNEAVWKY 78
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 27.1 bits (57), Expect = 2.4
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = -2
Query: 278 ASNIPHSKLMFLYSTVSTLKPIVGIVVTISPNLSLYRIVVLPAASKPTINILISFL 111
+S+ P+S+ + Y+ + L+ +VG+ + S + R LP N+LI L
Sbjct: 502 SSSSPYSRGPYKYNRIENLQMVVGVRASASGSFFAIRNDYLPPPIYKPSNMLIDLL 557
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 588 ESQSRPSYSPSPEVAHVAWMYQLRLRRNADPVC 490
E+Q PS+ S +V H+A Y R+N VC
Sbjct: 16 ENQKHPSFEGSNKVLHLALSYLNTNRQNPHWVC 48
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 255 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 359
F VWD GQ+K+ L Y+ Q I + D R
Sbjct: 60 FNVWDTAGQEKLGGLRDGYYIQGQCGIIMFDVTSR 94
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 523 VTVAQECRPSLSVISAAFIAFGKSCL 446
VT+A ECR S++ + FI K C+
Sbjct: 791 VTLAVECRSSITRVYKEFIRLSKLCM 816
>SPCC188.06c |srp54||signal recognition particle subunit
Srp54|Schizosaccharomyces pombe|chr 3|||Manual
Length = 522
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +1
Query: 127 ILMVGLDAAGKTTILYKLKL 186
I+MVGL +GKTT KL L
Sbjct: 104 IMMVGLQGSGKTTTCSKLAL 123
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +1
Query: 115 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTI 216
KE+R+++ G GK++++ L + VT+IP +
Sbjct: 2 KEVRVVICGDQGVGKSSLISALIQEDNVTSIPKV 35
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +1
Query: 91 LFKGLFGKKEMRILMVGLDAAGKTTI 168
L K ++GK+ + I+ +G AGK+T+
Sbjct: 229 LLKDMYGKEHVNIVFIGHVDAGKSTL 254
>SPCC553.09c |spb70|pol12|DNA polymerase alpha
B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 5.5
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Frame = +1
Query: 73 GNMFANLFKGLFGKKEMRILMVG--LDAAGKTTI-LYKLKLGEIVTTIPTIGFNVETVEY 243
GN+FA L + ++ L G L+ + + + LKLGE + T+P I + Y
Sbjct: 456 GNLFARLVSHVLHQRHFYPLFPGGSLEKCNPSNLDIAHLKLGEFLNTMPDILILPSDLRY 515
Query: 244 --KNISLLCGMLEAK-TKSDHCG 303
KN+ + + K TK + G
Sbjct: 516 FVKNVENVVSLNPGKATKGINLG 538
>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
1|||Manual
Length = 459
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +2
Query: 461 KRNERSRDNRQTGSAFLRNRNWYIQATCATSGD 559
K+NE + D R G F R++ + TC + D
Sbjct: 110 KKNENTFDRRIAGVTFYRSQMMLVTVTCILAVD 142
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +2
Query: 239 NTKTLVYCVGCWRPRQNQTTVEALFPKYTGSNL 337
N K L C G W P +T++ F K S L
Sbjct: 1029 NLKVLCICNGAWLPATFRTSLSTYFEKLKKSAL 1061
>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 25.8 bits (54), Expect = 5.5
Identities = 13/50 (26%), Positives = 29/50 (58%)
Frame = +1
Query: 112 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISLL 261
KK++ + ++G AGK++I+ L+ ++ P G ET ++ ++L+
Sbjct: 308 KKQISVGLIGFPNAGKSSIINTLRKKKVCNVAPIPG---ETKVWQYVALM 354
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 25.4 bits (53), Expect = 7.2
Identities = 9/43 (20%), Positives = 22/43 (51%)
Frame = +3
Query: 255 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEARE 383
F++WD+GGQ + + + ++F+ D + + + +E
Sbjct: 61 FSIWDLGGQREFVNMLPMVCNDAVAILFMFDLSRKSTLNSIKE 103
>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 127
Score = 25.4 bits (53), Expect = 7.2
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -1
Query: 573 PSYSPSPEVAHVAWMYQL 520
P+ SP PEV+H W+ L
Sbjct: 16 PNSSPDPEVSHKLWVSSL 33
>SPBC119.15 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 112 KKEMRILMVGLDAAGKTTILYKL 180
KK I++VG+ +GKTT + +L
Sbjct: 6 KKPCAIIVVGMAGSGKTTFMQQL 28
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 25.0 bits (52), Expect = 9.5
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +2
Query: 554 GDGLYEGLDWLSNQLKNAN 610
GD E +DWL + L+++N
Sbjct: 587 GDNTSENIDWLKHSLRDSN 605
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 342 VDSNDRERIGEAREELMRMLSEDE 413
+DS++ E I +A+ E+ LSE+E
Sbjct: 430 IDSDEEETIDDAKSEMFVDLSEEE 453
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +3
Query: 483 ITDKLGLHSCATVTGTSKRHAPLPETDCTRVSTGSP 590
IT+ S A+ TG+S P T CT ST P
Sbjct: 88 ITESTSSTSSASTTGSSSSPLPSTSTSCT-TSTSIP 122
>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 759
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +1
Query: 277 AKTKSDHCGGIISKIHRV*SS**TVTIGNVSAKH 378
A K+ + GG++S + ++ ++ TVT +S KH
Sbjct: 210 ANPKASYRGGVLSNLLKLYTNSNTVTSSRISLKH 243
>SPAC30C2.06c |dml1||mitochondrial genome maintenance protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 465
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 300 WRHYFQNTQGLIFVVDSNDRERI 368
W H++ NTQ FV D ND ++
Sbjct: 17 WTHFW-NTQESYFVYDPNDHAKV 38
>SPAC19E9.02 |fin1||serine/threonine protein kinase
Fin1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 25.0 bits (52), Expect = 9.5
Identities = 19/72 (26%), Positives = 34/72 (47%)
Frame = +3
Query: 378 REELMRMLSEDELRDAVLLIFANKQDLPNAMNAAEITDKLGLHSCATVTGTSKRHAPLPE 557
REE++R E +LRD + Q + N+M +T + H+ + T++
Sbjct: 340 REEILRRELEKQLRDMDARYQRHMQTVVNSMQKMRVTSPVD-HNEQPESSTAEMF----- 393
Query: 558 TDCTRVSTGSPI 593
DCT ++ SP+
Sbjct: 394 VDCTIEASQSPL 405
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,844,741
Number of Sequences: 5004
Number of extensions: 61804
Number of successful extensions: 227
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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