Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0782
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              25   0.84 
AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding prote...    24   1.5  
AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-bind...    24   1.5  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   7.9  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -2

Query: 284 VLASNIPHSKLMFLYSTVSTLKPIVGIVVTISPNLS 177
           + AS+I    ++FL  +   ++ I G+    SPNL+
Sbjct: 805 IYASSIDKENILFLDLSTGKVEMITGVGKATSPNLT 840


>AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding protein
           ASP2 protein.
          Length = 142

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -3

Query: 637 CELANIRLAVGVLELIGEPVETLVQSVSGSGACRLDVPVTVAQEC 503
           C +  I +  G  EL  EPV  +++ V    A  + +   +A EC
Sbjct: 72  CVMKRIEMLKGT-ELYVEPVYKMIEVVHAGNADDIQLVKGIANEC 115


>AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-binding
           protein ASP2 protein.
          Length = 142

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -3

Query: 637 CELANIRLAVGVLELIGEPVETLVQSVSGSGACRLDVPVTVAQEC 503
           C +  I +  G  EL  EPV  +++ V    A  + +   +A EC
Sbjct: 72  CVMKRIEMLKGT-ELYVEPVYKMIEVVHAGNADDIQLVKGIANEC 115


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 267 DVGGQDKIRPLWRH 308
           DV   DK+ PL+ H
Sbjct: 267 DVSSNDKVHPLYGH 280


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,230
Number of Sequences: 438
Number of extensions: 4267
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)