Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0781
         (732 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ...    34   0.018
SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|...    33   0.042
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    29   0.90 
SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protei...    27   2.8  
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    27   3.6  
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    26   6.4  

>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 34.3 bits (75), Expect = 0.018
 Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
 Frame = -1

Query: 705 IPVVAVKA*FFADCRE-PSKLFISDPKTATVLCSSASRIGVSASVGAPSSFLESVARSWV 529
           +P   VK  F    R+ P +LFI   K + VLC+      +   V + + F E +   + 
Sbjct: 217 LPKTKVKNYFRTYLRQKPEELFIFTTKFSIVLCAYMGNSQIFPLVSSKNCFEEPITPRFQ 276

Query: 528 AASTRLTVFDAVPLIRRVCDSARSYCLSILSLPC 427
           A   R+ + + +P ++ V  +++S  L++L L C
Sbjct: 277 ALH-RINMIECIPELQSVVCASQSGQLTLLRLIC 309


>SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 33.1 bits (72), Expect = 0.042
 Identities = 15/43 (34%), Positives = 28/43 (65%)
 Frame = -1

Query: 717 RTSSIPVVAVKA*FFADCREPSKLFISDPKTATVLCSSASRIG 589
           +TS++ +++ +A F++    PSKL I+D K    + + AS+IG
Sbjct: 166 KTSNVSIISAQAYFWSCFFSPSKLKITDAKPLAKVAAKASKIG 208


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 20/41 (48%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -2

Query: 224 QGSPSSLEADNSLPPRD--PTPTKASNSRLFLIFFPTLGGP 108
           QGS S LE  N+LP  D   + TKA  +R FL F P L  P
Sbjct: 799 QGSNSPLELINNLPASDDYSSITKALKTR-FLTFSPFLSKP 838


>SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protein
           Mcp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 417 QICHTAAKELRGNTSVLSHKLAELEE 494
           QIC T  K L  ++S    +L++LEE
Sbjct: 268 QICQTLRKRLENDSSTTKQRLSKLEE 293


>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1190

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 15/27 (55%), Positives = 17/27 (62%)
 Frame = +2

Query: 221 LGAGVRRDAVDPPIRSPGCRTRFVRLF 301
           +GA  R DAVDP +R PG   RF R F
Sbjct: 411 IGATNRPDAVDPALRRPG---RFDREF 434


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -1

Query: 564 SSFLESVARSWVAASTRLTVFDAVPLIRRVCDSARSYCLSIL 439
           SSF+E     W  A+  L++   +    R+  S + +CLSI+
Sbjct: 448 SSFIEEEHVIWYFAAVSLSLLQLLNPKTRLAGSLQLFCLSII 489


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,885,564
Number of Sequences: 5004
Number of extensions: 58452
Number of successful extensions: 224
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)