Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0781
(732 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0029 + 5123035-5123271 33 0.18
02_03_0028 - 14072389-14072396,14072646-14072723,14074132-14074327 33 0.23
01_06_1367 - 36711738-36711774,36711962-36712686,36713217-367132... 32 0.41
10_08_0613 - 19232706-19232822,19232936-19233010,19233132-192332... 31 0.71
08_01_0264 - 2142856-2143152,2143667-2143829,2143915-2143992,214... 30 1.6
01_06_0237 + 27770777-27771120,27771209-27771438,27771951-277720... 30 2.2
12_01_0445 - 3513733-3513819,3514392-3514613,3514730-3514999,351... 29 2.9
09_04_0115 - 14789499-14790288,14792055-14792441,14792820-14793193 29 2.9
08_02_0959 - 23055078-23055177,23055408-23055985 29 2.9
09_04_0347 + 16887182-16888504 29 3.8
11_06_0752 - 26927573-26927680,26928061-26928363 29 5.0
04_04_0239 - 23843235-23843243,23843334-23844047,23844138-238442... 29 5.0
01_06_0697 - 31301794-31302034,31302672-31303329,31303896-313040... 29 5.0
09_02_0023 + 3076899-3077066,3077144-3077203,3077561-3077686,307... 28 6.6
03_02_1023 + 13265179-13265330,13265526-13265637,13265752-132660... 28 6.6
10_08_0437 + 17917775-17918021,17918113-17918303 28 8.8
09_06_0107 + 20907560-20908491,20908511-20908625,20908967-209090... 28 8.8
09_02_0104 - 4329068-4329926,4330967-4331811 28 8.8
08_02_1579 + 27997714-27998199,27998718-27998789,27999073-279991... 28 8.8
04_04_1582 - 34590698-34591199,34593849-34594690 28 8.8
01_05_0779 + 25128320-25128518,25129048-25129141,25129867-251300... 28 8.8
01_01_0074 - 561304-562131,562219-562425,563034-563084,563310-56... 28 8.8
>03_02_0029 + 5123035-5123271
Length = 78
Score = 33.5 bits (73), Expect = 0.18
Identities = 18/44 (40%), Positives = 28/44 (63%)
Frame = -1
Query: 624 ATVLCSSASRIGVSASVGAPSSFLESVARSWVAASTRLTVFDAV 493
+TV CSS SR S+S G+P++F + + + V A L+VF A+
Sbjct: 23 STVACSSRSRRTGSSSCGSPTAFCDHLPMAVVDAVVLLSVFAAL 66
>02_03_0028 - 14072389-14072396,14072646-14072723,14074132-14074327
Length = 93
Score = 33.1 bits (72), Expect = 0.23
Identities = 19/39 (48%), Positives = 24/39 (61%)
Frame = -1
Query: 627 TATVLCSSASRIGVSASVGAPSSFLESVARSWVAASTRL 511
TA L SSA + VSAS APS+ L + WVA+S +L
Sbjct: 8 TAPSLASSALPLVVSASAAAPSTRLAELLPWWVASSPQL 46
>01_06_1367 -
36711738-36711774,36711962-36712686,36713217-36713284,
36714043-36714157
Length = 314
Score = 32.3 bits (70), Expect = 0.41
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +3
Query: 96 GTRFWPAQGR--EEDEEEAGIGRFSRCRISWGQTVVC 200
GTR WP +G+ + D++ AG GR C S+ + C
Sbjct: 144 GTRIWPPEGQVLQTDKKIAGQGRMESCNCSYPGSFFC 180
>10_08_0613 -
19232706-19232822,19232936-19233010,19233132-19233287,
19233412-19233549,19233571-19233771,19233985-19234086,
19234960-19235111,19235213-19235282,19235416-19235532,
19235674-19235733
Length = 395
Score = 31.5 bits (68), Expect = 0.71
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 16/94 (17%)
Frame = +2
Query: 419 DMPHGSERIERQYERAESQT-------RRIRGTASN--TVSRVDAATQDL-------ATL 550
D H ++R +R + AE+Q ++R T+ N +SR++AA L L
Sbjct: 149 DARHLAQRYDRMRQEAEAQAIEVSKRQMKLRETSGNGDMISRLEAAESKLQELKSNMGVL 208
Query: 551 SKKLDGAPTLADTPMRLAELQRTVAVFGSEIKSL 652
K+ + T + + LQR +A+FG I SL
Sbjct: 209 GKEAVASMTAVEAQQQRLTLQRLIAMFGQLISSL 242
>08_01_0264 -
2142856-2143152,2143667-2143829,2143915-2143992,
2144097-2144162,2144941-2145098
Length = 253
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = +3
Query: 336 DVRRQIVSLRMEMDRVSTSSASVTDALQICHTAAKELRGNTSVLSHKLAELEEQHQIL*A 515
D R ++ LR E ++ ++ S+ D ++ ELR L + LE+Q +IL A
Sbjct: 125 DATRMVIQLRAEAKQLKDTNESLEDKIKELKAEKDELRDEKQKLKVEKETLEQQVKILTA 184
Query: 516 VSTRPP 533
P
Sbjct: 185 TPAYMP 190
>01_06_0237 +
27770777-27771120,27771209-27771438,27771951-27772092,
27772266-27772281
Length = 243
Score = 29.9 bits (64), Expect = 2.2
Identities = 30/88 (34%), Positives = 38/88 (43%), Gaps = 8/88 (9%)
Frame = -2
Query: 287 SESCSQA-NEWADRR--RLVVRLP-QGSPSS----LEADNSLPPRDPTPTKASNSRLFLI 132
S SCS + N + R RL +RL GS S + A +L P PT TKA++ R F
Sbjct: 24 SSSCSSSPNPGGEARGPRLTLRLGLPGSESPEREVVAAGLTLGPLPPTTTKAASKRAFPD 83
Query: 131 FFPTLGGPEACTALPITNTDATVNASAP 48
P G A D A+AP
Sbjct: 84 SSPRHGASSGSVAAAAACQDKAAPAAAP 111
>12_01_0445 - 3513733-3513819,3514392-3514613,3514730-3514999,
3515033-3517110,3517649-3517976,3519136-3519255,
3519299-3519352,3520115-3520154,3520344-3520411
Length = 1088
Score = 29.5 bits (63), Expect = 2.9
Identities = 22/73 (30%), Positives = 37/73 (50%)
Frame = +2
Query: 434 SERIERQYERAESQTRRIRGTASNTVSRVDAATQDLATLSKKLDGAPTLADTPMRLAELQ 613
SE E++Y + E+ R R + + R+ + L +K LA+ +LAE Q
Sbjct: 949 SEEFEQEYHKLEA--RLSRDSRDAKLWRLANSNGGLKAKQEK-----ELANAAGKLAECQ 1001
Query: 614 RTVAVFGSEIKSL 652
+T+A G ++KSL
Sbjct: 1002 KTIASLGRQLKSL 1014
>09_04_0115 - 14789499-14790288,14792055-14792441,14792820-14793193
Length = 516
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/70 (25%), Positives = 28/70 (40%)
Frame = +2
Query: 509 VSRVDAATQDLATLSKKLDGAPTLADTPMRLAELQRTVAVFGSEIKSLDGSLQSAKNQAL 688
V TQDL K +DG P L D + + + T + S+ S L+ K +
Sbjct: 305 VKHCSGVTQDLLNRLKNIDGKPIL-DFTQLVGKFEMTASSMSSKYSSATKKLKRKKTDMV 363
Query: 689 TATTGIEEVR 718
+G + R
Sbjct: 364 ACRSGSKRSR 373
>08_02_0959 - 23055078-23055177,23055408-23055985
Length = 225
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -2
Query: 149 SRLFLIFFPTLGGPEACTA-LPITNTDATVNASAPQLIIWTL 27
SRL F TL G A ++ LP+ +T VNA+ P L +L
Sbjct: 33 SRLNFGVFATLNGTNASSSGLPVQSTPLVVNAALPSLYFMSL 74
>09_04_0347 + 16887182-16888504
Length = 440
Score = 29.1 bits (62), Expect = 3.8
Identities = 28/120 (23%), Positives = 46/120 (38%)
Frame = +2
Query: 371 NGQSIHKQCQRYRRPADMPHGSERIERQYERAESQTRRIRGTASNTVSRVDAATQDLATL 550
N + + ++Y R +D S R R + S + + V+A + +
Sbjct: 302 NADAGESEEEQYGRESDDDMESGRDNRHRKNQRSVPVTMANGNGTGIGAVNAIVRGRSEF 361
Query: 551 SKKLDGAPTLADTPMRLAELQRTVAVFGSEIKSLDGSLQSAKNQALTATTGIEEVRNLLR 730
K D P L +T L+ T AVF + L+GS + L + E+R LR
Sbjct: 362 EKGKDVYPYLWETVEELSSQHPTGAVFKKAFELLEGSKAQVMEEKLRKFR-LTEMRQQLR 420
>11_06_0752 - 26927573-26927680,26928061-26928363
Length = 136
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +2
Query: 359 ASNGNGQSIHKQCQRYRRPADMPHGSERIERQYERAESQTRRIRGTASNTVS 514
A+NG+G+ + + C+ + MP + R Y S R + T+S+ +S
Sbjct: 80 AANGSGELLAQLCRSRQNVGLMPRFPLSLCRLYSTKSSSERHVLATSSDEIS 131
>04_04_0239 -
23843235-23843243,23843334-23844047,23844138-23844287,
23844389-23844601,23844697-23844811,23844919-23846300,
23847217-23847279
Length = 881
Score = 28.7 bits (61), Expect = 5.0
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = +2
Query: 551 SKKLDGAPTLADTPMRLAELQRTVAVFGSEIKSLDGSLQSAKNQALT 691
SK AP+LAD RLA+L + S S DGS S+ + T
Sbjct: 161 SKAASSAPSLADLLDRLAKLMAPKSKMQSSSGSADGSSGSSSGRGQT 207
>01_06_0697 -
31301794-31302034,31302672-31303329,31303896-31304091,
31304169-31304396,31304497-31304925,31305043-31305249,
31305442-31305633,31305772-31306143
Length = 840
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -1
Query: 642 ISDPKTATVLCSSASRIGVSASVGAPSSFLESVARSWVA 526
+S K A +L + A R G S A + + ARSW+A
Sbjct: 472 VSREKVANILLAHAGRGGSSGLTEAAAEIARAAARSWLA 510
>09_02_0023 +
3076899-3077066,3077144-3077203,3077561-3077686,
3077757-3077903,3077940-3078431
Length = 330
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/71 (21%), Positives = 29/71 (40%)
Frame = +2
Query: 347 TNRVASNGNGQSIHKQCQRYRRPADMPHGSERIERQYERAESQTRRIRGTASNTVSRVDA 526
+N++AS + KQC R + PH ++ ++ + + Q + +
Sbjct: 178 SNKIASAAFLEQYEKQCHRATKRIADPHEAQALDATIDTCQKQIIEDKAILDQLAIALSP 237
Query: 527 ATQDLATLSKK 559
+LATL K
Sbjct: 238 MEHELATLQVK 248
>03_02_1023 + 13265179-13265330,13265526-13265637,13265752-13266048,
13266361-13266623,13267637-13267847,13268420-13268590,
13268671-13268748,13269275-13269520,13269763-13271868,
13272122-13273904,13274113-13274216,13274752-13275108,
13275210-13275328,13276175-13276436,13276669-13276893,
13277075-13277214,13278087-13278159,13278431-13278532,
13278647-13279018,13279183-13279230,13279516-13279900,
13280440-13280558
Length = 2574
Score = 28.3 bits (60), Expect = 6.6
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = -2
Query: 248 RRLVVRLPQGSPSSLEADNSLPPRDPTPTKASNS 147
+++ ++P+G+ +S E + LPPR P+ + +S
Sbjct: 2525 KKIKSKVPKGAATSQELGSELPPRGPSGNQTDSS 2558
>10_08_0437 + 17917775-17918021,17918113-17918303
Length = 145
Score = 27.9 bits (59), Expect = 8.8
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = +2
Query: 368 GNGQSIHKQCQRYRRPADMPHGSERIERQYERAESQTRRIR 490
GNG + +Q + RR A G + E ERAE RRIR
Sbjct: 94 GNGGAGGEQEGKRRRSAAAAAGKDSAEMAIERAERCLRRIR 134
>09_06_0107 +
20907560-20908491,20908511-20908625,20908967-20909058,
20909293-20909556,20910714-20911494
Length = 727
Score = 27.9 bits (59), Expect = 8.8
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Frame = -2
Query: 293 AQSESCSQANEWADRRRLVVRLPQGSPSSLEADNSLPPRD---PTPTKASNSRLFLIFFP 123
+ S S ++ EW D +V P P A + PP T T ++ S L ++ P
Sbjct: 139 SSSRSATEDAEWDDAATTIVDAPNAPPVVTVAAAAAPPPSVVTATTTTSTASELTVVAVP 198
Query: 122 TLGG 111
GG
Sbjct: 199 RGGG 202
>09_02_0104 - 4329068-4329926,4330967-4331811
Length = 567
Score = 27.9 bits (59), Expect = 8.8
Identities = 16/43 (37%), Positives = 27/43 (62%)
Frame = -1
Query: 228 APRFPFIARGRQQSAPTRSDTD*SVQFPPLPHLLPDPGRARSV 100
APRF F ++ +++ ++ TD + Q PLP L+ +P ARS+
Sbjct: 377 APRF-FSSKSKKEK---KAKTDIASQVRPLPELVAEPTDARSM 415
>08_02_1579 +
27997714-27998199,27998718-27998789,27999073-27999120,
27999203-27999357,27999477-27999671,27999743-27999854,
27999955-28000024,28000110-28000168,28000251-28000374,
28000465-28000535,28001053-28001154,28001242-28001322,
28001504-28001662,28001757-28001807
Length = 594
Score = 27.9 bits (59), Expect = 8.8
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +1
Query: 397 PALPTPCRYATRQRKN*EAIRAC*VTNSPN-*RNSIKYCEPCRRG 528
P+LP P + R+R+ E IRA V++ P + S + EP +G
Sbjct: 9 PSLPAPATASGRRRRRLERIRATAVSDEPKLNKYSARITEPKSQG 53
>04_04_1582 - 34590698-34591199,34593849-34594690
Length = 447
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/38 (34%), Positives = 16/38 (42%)
Frame = -1
Query: 231 PAPRFPFIARGRQQSAPTRSDTD*SVQFPPLPHLLPDP 118
P P P IA G P V PP+P+ +P P
Sbjct: 406 PVPAAPHIAYGMHAPVPGAVVPGAPVNMPPMPYPMPPP 443
>01_05_0779 +
25128320-25128518,25129048-25129141,25129867-25130078,
25130924-25131054,25131933-25132041,25132180-25132659,
25133194-25133531,25133810-25133977
Length = 576
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -1
Query: 237 RTPAPRFPFIARGRQQSAPTR 175
R PAP FPF A G Q + P R
Sbjct: 4 RAPAPGFPFHASGSQWTQPQR 24
>01_01_0074 -
561304-562131,562219-562425,563034-563084,563310-563408,
564476-564622,564750-564851,565713-565928,566061-566192,
566249-566310,567618-567746,568426-568567,568735-568830,
568924-569000,569070-569148,569229-569297,569589-569703,
570614-570777,570847-571002
Length = 956
Score = 27.9 bits (59), Expect = 8.8
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +2
Query: 554 KKLDGAPTLADTPMRLAELQRTVAVFGSEIKSLDGSLQSAKN-QALTATT 700
K+ G+ LAD RLA+L R VA FG + LD +S ++ + L A T
Sbjct: 479 KQSCGSSVLADG--RLADLIRRVATFGMVLMKLDVRQESGRHTETLDAIT 526
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,987,225
Number of Sequences: 37544
Number of extensions: 483194
Number of successful extensions: 2006
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2003
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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