Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0781
(732 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56256| Best HMM Match : Ras (HMM E-Value=8.9e-31) 36 0.045
SB_55739| Best HMM Match : Protamine_P2 (HMM E-Value=1.9) 34 0.10
SB_23775| Best HMM Match : Tropomyosin (HMM E-Value=0) 33 0.18
SB_11571| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.32
SB_35403| Best HMM Match : Lectin_C (HMM E-Value=1e-05) 31 0.96
SB_4107| Best HMM Match : M (HMM E-Value=8e-22) 31 1.3
SB_43343| Best HMM Match : fn3 (HMM E-Value=3.4e-39) 30 1.7
SB_38795| Best HMM Match : M (HMM E-Value=2.4e-07) 30 1.7
SB_42014| Best HMM Match : Myosin_tail_1 (HMM E-Value=0.083) 30 2.2
SB_49899| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_33702| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_25792| Best HMM Match : Extensin_2 (HMM E-Value=1) 29 3.9
SB_59599| Best HMM Match : rve (HMM E-Value=1.69557e-43) 29 5.1
SB_23835| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_23466| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_50367| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_15797| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_9925| Best HMM Match : Kinesin (HMM E-Value=0.00094) 28 6.8
SB_4414| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
>SB_56256| Best HMM Match : Ras (HMM E-Value=8.9e-31)
Length = 506
Score = 35.5 bits (78), Expect = 0.045
Identities = 24/79 (30%), Positives = 36/79 (45%)
Frame = -1
Query: 339 RPRKAIILLQLTLNRRTKRVLQPGERMGGSTASRRTPAPRFPFIARGRQQSAPTRSDTD* 160
+PR + L +L T+R+L P R S TP+P FP + + T S +
Sbjct: 79 KPRSSSALCVHSLTPNTRRLLSPLTR-DSRPRSSSTPSPHFPVSVTNMEVNGSTLSRAEE 137
Query: 159 SVQFPPLPHLLPDPGRARS 103
S +F HL+ D R R+
Sbjct: 138 SKRFTIEVHLIDDITRHRA 156
>SB_55739| Best HMM Match : Protamine_P2 (HMM E-Value=1.9)
Length = 678
Score = 34.3 bits (75), Expect = 0.10
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +2
Query: 401 RYRRPADMPHGSERIERQY-ERAESQTRRIRGTASNTVSRVDAATQDLATLSKKLDGAPT 577
R+R+ D+P R ERQ+ + SQTR+ R + ++VD + ++ + S D +
Sbjct: 467 RHRQHNDLPRSQTREERQHTDLPRSQTRKERRKGTGKSTKVDVSLEERGSSSDSWDSEES 526
Query: 578 LADTPM 595
L P+
Sbjct: 527 LHVRPL 532
>SB_23775| Best HMM Match : Tropomyosin (HMM E-Value=0)
Length = 442
Score = 33.5 bits (73), Expect = 0.18
Identities = 27/129 (20%), Positives = 52/129 (40%), Gaps = 5/129 (3%)
Frame = +2
Query: 344 KTNRVASNGNGQSIHKQCQRYRRPADMPHGSERIERQYERAESQTRRIRGTASNTVSRVD 523
+ +V N + R+ D +E E+QYE + + + + D
Sbjct: 83 RARKVLENRGASDEERLASLERQYNDALERTEEAEKQYEEISERLQELENELEEAEQKAD 142
Query: 524 AATQDLATLSKKLDGAPTLADTPMRLAELQRTVA-----VFGSEIKSLDGSLQSAKNQAL 688
AA + K+L+ TL +R E+ A + ++I+ L+ LQ A+ +A
Sbjct: 143 AAEARV----KELEEEVTLVGNNLRSLEISEGKASEREDTYENQIRELETKLQDAEERAE 198
Query: 689 TATTGIEEV 715
A ++E+
Sbjct: 199 KAEQKVQEL 207
>SB_11571| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 469
Score = 32.7 bits (71), Expect = 0.32
Identities = 25/70 (35%), Positives = 29/70 (41%)
Frame = -1
Query: 342 ARPRKAIILLQLTLNRRTKRVLQPGERMGGSTASRRTPAPRFPFIARGRQQSAPTRSDTD 163
A P + LQ T T + L+P R T TP PR PF S P +S T
Sbjct: 120 AYPPRQSYALQQTTPLHTSQPLRPTPRRPSDTPQPFTPPPR-PFDDLRSLSSTPRKSTT- 177
Query: 162 *SVQFPPLPH 133
S QF P H
Sbjct: 178 -SPQFTPFTH 186
>SB_35403| Best HMM Match : Lectin_C (HMM E-Value=1e-05)
Length = 2293
Score = 31.1 bits (67), Expect = 0.96
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Frame = +3
Query: 369 EMDRVSTSSASVTDALQICHTAAKELR----GNTSVLSHKLAELEEQHQIL 509
E++ ++ + ++A+ T AKE R GN ++ SH+L E E+HQ++
Sbjct: 122 EINENTSLEENSSNAVMTIQTVAKEKRKHDQGNENLASHRLNESRERHQVI 172
>SB_4107| Best HMM Match : M (HMM E-Value=8e-22)
Length = 2039
Score = 30.7 bits (66), Expect = 1.3
Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = -1
Query: 297 RRTKRVLQPGERMGGSTASRRT--PAPRFPFIARGRQQSAPTRS--DTD 163
RRT + PGE G S + RT P+PR R R +S P +S DTD
Sbjct: 1358 RRTLGIRPPGENSGRSPSPSRTRSPSPRRRMFGRSRSRS-PEKSMDDTD 1405
>SB_43343| Best HMM Match : fn3 (HMM E-Value=3.4e-39)
Length = 2865
Score = 30.3 bits (65), Expect = 1.7
Identities = 21/56 (37%), Positives = 23/56 (41%)
Frame = -2
Query: 221 GSPSSLEADNSLPPRDPTPTKASNSRLFLIFFPTLGGPEACTALPITNTDATVNAS 54
G SS +L DP PT S LI P P + LPI T A NAS
Sbjct: 1506 GPWSSTRLIKTLGGNDPEPTTTSTMSKSLITSPVTIFPTPISTLPIYQTIAVSNAS 1561
>SB_38795| Best HMM Match : M (HMM E-Value=2.4e-07)
Length = 1447
Score = 30.3 bits (65), Expect = 1.7
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Frame = +3
Query: 348 QIVSLRMEMDRVSTSSASVTDALQICHTAAKELRGNTSVLSHKLAEL-EEQHQIL*AVST 524
++ SLR E+ VST+ + AL+ L T+ L +L E ++ AVS
Sbjct: 948 ELSSLRQELSNVSTTGTKASTALEFESKIRGSLEARTNHLESELTRAWEHNKELTTAVSN 1007
Query: 525 RPPRTWRRSLRSSMEHRRLQTRRCDS 602
+R L ++ + Q R+ +S
Sbjct: 1008 LEAN--KRHLEVELDRKTQQVRQAES 1031
>SB_42014| Best HMM Match : Myosin_tail_1 (HMM E-Value=0.083)
Length = 1007
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Frame = +2
Query: 311 CNSIMAFRGRAKTNRVA-SNGNGQSIHKQCQRYRRPADMPHGSERIERQYERAESQTRRI 487
C I+ +G+ + + +N N Q + QC Y++ + + +E Q +RAE+
Sbjct: 892 CQKILDLKGKQEDLSIQLANRNMQIMELQCTAYKQEDTIALLNREVEYQRKRAENMANDA 951
Query: 488 RGTASNTVSRVDAATQD 538
+ DAA D
Sbjct: 952 NKLREERERKKDAAAAD 968
>SB_49899| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 122
Score = 29.1 bits (62), Expect = 3.9
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = +2
Query: 470 SQTRRIRGTASNTVSRVDAATQDLATLSKKLDGAPTLADTPMRLAELQRTVAVF 631
SQ+RR + TAS ++ + ++ + S KLD T ADT R L R + F
Sbjct: 60 SQSRRCKTTASAKLACLQVDSRGSPSHSTKLDIIATSADTFFRSRSLLRGLGFF 113
>SB_33702| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 479
Score = 29.1 bits (62), Expect = 3.9
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Frame = -1
Query: 276 QPGERMGGSTASRRTPAPRFPFIARGRQQSAPTRSDTD*SVQFPPLP--HLLPDPGRA 109
+ G +G + P+PR G+ S P RSD+ + P P HL P P A
Sbjct: 200 EQGSELGRPPSKPLPPSPRSKSPMPGQSLSLPQRSDSTEGLSVRPAPYSHLPPCPSAA 257
>SB_25792| Best HMM Match : Extensin_2 (HMM E-Value=1)
Length = 440
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = -3
Query: 397 ALLVDTLSISIRSDTICLRTSTKSHNTVAADTKQTHKASPAARRTNGRIDGVSSYAC 227
A + D LSI T+ + T T++ N + ++ ++H ASP G D C
Sbjct: 262 APIPDILSIGSPFPTVDMHTQTQAENQDSQESSRSHSASPCYPIMAGTTDSKPPSRC 318
>SB_59599| Best HMM Match : rve (HMM E-Value=1.69557e-43)
Length = 1803
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 90 ECGTRFWPAQGREEDEEEAGIGRFSRCRI 176
E G R W + EE+EE G R+SR R+
Sbjct: 504 ESGKRVWYEEEEEEEEEGEGGRRYSRQRV 532
>SB_23835| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 596
Score = 28.7 bits (61), Expect = 5.1
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 332 RGRAKTNRVASNGNGQSIHKQCQRYRR 412
+ R + R+ + G IH+QC++YRR
Sbjct: 540 KDREEEERMRAQSPGMLIHEQCEKYRR 566
>SB_23466| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 174
Score = 28.7 bits (61), Expect = 5.1
Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 2/106 (1%)
Frame = +2
Query: 332 RGRAKTNRVASNGNGQSIHKQCQRYRRPADMPHGSERI--ERQYERAESQTRRIRGTASN 505
+G ++ S+G Q + + P+D+ +E+ ER YERA+S
Sbjct: 21 QGLSRYYATESSGMVQKLKRFVMGEGAPSDVTLQTEKEARERYYERADSVVEP--AIYDM 78
Query: 506 TVSRVDAATQDLATLSKKLDGAPTLADTPMRLAELQRTVAVFGSEI 643
V + D+ + S DG +D ++ L+ VFG I
Sbjct: 79 DVESIKLNIDDIVSKSLPKDGCDIKSDLSLKFKVLEECYKVFGLRI 124
>SB_50367| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1498
Score = 28.3 bits (60), Expect = 6.8
Identities = 11/41 (26%), Positives = 20/41 (48%)
Frame = -1
Query: 501 DAVPLIRRVCDSARSYCLSILSLPCGISAGRR*RWHCLWIL 379
+ ++ R+C + YC +I+S +R W C W+L
Sbjct: 1310 ETAEMLHRICCNVIGYCRTIVSSSDTRCVCKRTDWECDWLL 1350
>SB_15797| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 65
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = -1
Query: 648 LFISDPKTATVLCSSASRIGVSASVGAPSSFLESVARSWVAA 523
LF + P AT +CS A +G + + P+S+ + ++ + A
Sbjct: 23 LFATTPAAATAMCSKAITLGNARAFPVPTSYTDGQCQARMPA 64
>SB_9925| Best HMM Match : Kinesin (HMM E-Value=0.00094)
Length = 1671
Score = 28.3 bits (60), Expect = 6.8
Identities = 18/63 (28%), Positives = 26/63 (41%)
Frame = -2
Query: 236 VRLPQGSPSSLEADNSLPPRDPTPTKASNSRLFLIFFPTLGGPEACTALPITNTDATVNA 57
+ L GS SL++D LPPR P L+ P E +T+ TV +
Sbjct: 861 LELRAGSNDSLDSDPELPPRSPAMDTPMQMFYHLVPSPQSSSTEEDCDDGMTSKSKTVKS 920
Query: 56 SAP 48
+P
Sbjct: 921 LSP 923
>SB_4414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 877
Score = 28.3 bits (60), Expect = 6.8
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +1
Query: 313 QQYYGFSWTCEDKSCRFEWKWTE 381
+Q++G CE++SC+ + KWT+
Sbjct: 153 EQFFGLG-DCEEESCQIQRKWTQ 174
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,461,285
Number of Sequences: 59808
Number of extensions: 527072
Number of successful extensions: 1770
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1768
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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